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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MIFVKNLASVLSQEWSSTEKYPGVRWKFLIDADFDGSSGLSLGFAEIAPGGDLTLHYHSPAEIYVVTNGKGILNKSGKLE
TIKKGDVVYIAGNAEHALKNNGKETLEFYWIFPTDRFSEVEAFPA

The query sequence (length=125) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5tg0:A 137 125 0.9920 0.9051 0.9920 5.11e-89 6a53:A, 6a53:B, 6a54:A, 6a54:B, 6a55:A, 6a55:B, 8hlf:A, 8hlf:B, 5tfz:A, 5tfz:B
2 1o4t:A 115 68 0.1840 0.2000 0.3382 6.92e-07 1o4t:B
3 3ht2:A 143 90 0.2080 0.1818 0.2889 4.19e-06 3ht2:C
4 5uqp:B 112 66 0.1760 0.1964 0.3333 2.13e-05 5uqp:A
5 8hjx:A 118 100 0.2080 0.2203 0.2600 3.93e-05 8hjx:B, 8hjy:A, 8hjy:B, 8hjz:A, 8hjz:B, 6l2d:A, 6l2d:B, 6l2e:A, 6l2e:B, 6l2f:A, 6l2f:B, 1vj2:A, 1vj2:B, 5wse:A, 5wse:B, 5wse:C, 5wse:D, 5wsf:A, 5wsf:B, 5wsf:C, 5wsf:D, 8zyg:A, 8zyg:B, 8zyh:A, 8zyh:B
6 8ch4:D 183 73 0.1760 0.1202 0.3014 1.73e-04 8ch4:A, 8ch4:B, 8ch4:C
7 6l9i:A 338 100 0.2480 0.0917 0.3100 4.03e-04 6l9i:B, 6l9i:C, 6l9i:D, 6l9i:E, 6l9i:F
8 2vqa:A 356 95 0.1840 0.0646 0.2421 0.005 2vqa:B, 2vqa:C
9 2vqa:A 356 97 0.2160 0.0758 0.2784 0.008 2vqa:B, 2vqa:C
10 3jzv:A 148 75 0.1600 0.1351 0.2667 0.006
11 5u93:B 161 69 0.1440 0.1118 0.2609 0.016 5u93:A, 5u9e:A, 5u9e:B
12 4b29:A 195 53 0.1200 0.0769 0.2830 0.057
13 6nwo:D 165 88 0.1680 0.1273 0.2386 0.074 6nwh:A, 6nwh:B, 6nwj:A, 6nwj:B, 6nwm:A, 6nwm:B, 6nx3:A, 6nx3:B, 6nx3:C, 6nx3:D, 6nx3:E, 6nx3:F
14 4bif:A 131 49 0.1280 0.1221 0.3265 0.098 4bif:B, 4bif:C, 4bif:D, 4bif:E, 4bif:F, 4bif:G, 4bif:H, 8oz8:A, 8oz8:B, 8oz8:C, 8oz8:D, 4uxa:A, 4uxa:B, 4uxa:C, 4uxa:D, 4uxa:E, 4uxa:F, 4uxa:G, 4uxa:H, 4uxa:I, 4uxa:J, 4uxa:K, 4uxa:L, 4uxa:M, 4uxa:N, 4uxa:O, 4uxa:P, 4uxa:Q, 4uxa:R, 4uxa:S, 4uxa:T
15 4lum:A 190 68 0.1760 0.1158 0.3235 0.10 2gc0:A, 2gc0:B, 2gc1:A, 2gc1:B, 2gc2:A, 2gc2:B, 2gc3:A, 2gc3:B, 4lta:A, 4lta:B, 4luk:A, 4lul:A, 4lul:B, 4lum:B, 1qxr:A, 1qxr:B, 1qy4:A, 1qy4:B, 1x7n:A, 1x82:A
16 3kgz:A 145 66 0.1280 0.1103 0.2424 0.15 3kgz:B
17 6l4m:A 357 112 0.2320 0.0812 0.2589 0.28
18 1lr5:D 160 38 0.1040 0.0813 0.3421 0.30 1lr5:C, 1lr5:B, 1lr5:A, 1lrh:D, 1lrh:C, 1lrh:B, 1lrh:A
19 1j3p:A 187 68 0.1520 0.1016 0.2794 0.61 1j3q:A, 1j3q:B, 1j3r:A, 1j3r:B
20 6b8w:B 95 65 0.1440 0.1895 0.2769 1.7
21 3w5m:A 1030 54 0.1440 0.0175 0.3333 2.0 3w5n:A
22 5nw7:A 440 98 0.2160 0.0614 0.2755 4.2 1pmi:A
23 5vf5:A 370 71 0.1360 0.0459 0.2394 4.3
24 2hrp:M 218 77 0.1840 0.1055 0.2987 4.5 4bkl:B, 6bzy:L, 6gxx:L, 2hrp:L, 5mu0:B, 5mu0:D, 5mu0:F, 5mu0:H, 5mu0:J, 5mu0:L, 5mu0:N, 5mu0:P, 5mu2:B, 5mu2:D, 5mu2:F, 5mu2:H, 5mu2:J, 5mu2:L, 5mu2:N, 5mu2:P, 5mub:B, 5mub:D, 5mub:G, 5mub:J, 5mub:M, 5mub:P, 5mub:S, 5mub:V, 5mv3:B, 5mv3:D, 5mv3:G, 5mv3:J, 5mv3:M, 5mv3:P, 5mv3:S, 5mv3:V, 5mv4:B, 5mv4:D, 5mv4:G, 5mv4:J, 5mv4:M, 5mv4:P, 5mv4:S, 5mv4:V, 4nj9:L, 4nja:L, 3o41:L, 3o41:B, 3o45:L, 3o45:B, 2or9:L, 2or9:M
25 5lzw:jj 425 63 0.1600 0.0471 0.3175 6.3 5lzx:jj, 5lzy:jj, 5lzz:jj
26 1sc7:A 567 17 0.0720 0.0159 0.5294 7.2 1a31:A, 1a36:A, 1ej9:A, 1k4t:A, 1lpq:A, 1nh3:A, 1r49:A, 1rrj:A, 1seu:A, 1t8i:A, 1tl8:A
27 1rr8:C 494 17 0.0720 0.0182 0.5294 7.6 1a35:A, 1k4s:A
28 6bld:A 414 23 0.0800 0.0242 0.4348 9.4
29 3e74:A 429 58 0.1520 0.0443 0.3276 9.4 3e74:C, 3e74:D
30 8hfd:A 452 58 0.1520 0.0420 0.3276 9.5 3e74:B, 8hfd:B, 8hfd:C, 8hfd:D
31 5mjv:B 239 34 0.0880 0.0460 0.3235 9.5 4z92:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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