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BioLiP
>protein
MIDGISIYSGRAIPKGSSTVRITNDGKQQLTANKKERSLISRKINPKLVKWTIPSRVVRKKHELFTSSQKNIPRPARIER
GFRNISADLL

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6rm3:LW0 90 90 1.0000 1.0000 1.0000 2.32e-61
2 7qep:N4 89 90 0.4556 0.4607 0.4556 2.33e-22
3 6zu5:LW0 93 59 0.3333 0.3226 0.5085 3.33e-15
4 8p5d:LW0 102 90 0.2889 0.2549 0.2889 2.03e-05 8p60:LW0, 8p60:KW0, 7qca:LW0
5 5ndg:n4 118 59 0.2111 0.1610 0.3220 0.013
6 4v6w:CW 130 60 0.2333 0.1615 0.3500 0.018 6xu6:CW, 6xu7:CW, 6xu8:CW
7 5xxb:V 63 59 0.2222 0.3175 0.3390 0.021
8 9bh5:CW 88 56 0.1889 0.1932 0.3036 0.023 9cai:CW
9 5dat:n4 135 59 0.2111 0.1407 0.3220 0.030 8aaf:J, 8agt:J, 8agu:J, 8agv:J, 8agw:J, 8agx:J, 8agz:J, 5apn:W, 5apo:W, 7azy:f, 7b7d:LS, 8bip:LW, 8bjq:LW, 8bn3:N4, 8bqd:AE, 8bqx:AE, 8ccs:I, 8cdl:I, 8cdr:I, 8ceh:I, 8cf5:I, 8cg8:I, 8cgn:I, 8civ:I, 8cku:I, 8cmj:I, 5dat:N4, 5dc3:N4, 5dc3:n4, 5dge:N4, 5dge:n4, 5dgf:N4, 5dgf:n4, 5dgv:N4, 5dgv:n4, 8eub:AW, 8evp:AW, 8evq:AW, 8evr:AW, 8evs:AW, 8evt:AW, 8ewb:AW, 8ewc:AW, 5fci:N4, 5fci:n4, 5fcj:N4, 5fcj:n4, 5gak:Y, 6gq1:W, 6gqb:W, 6gqv:W, 5h4p:W, 6hd7:Y, 6hhq:7, 6hhq:CY, 5i4l:N4, 5i4l:n4, 6i7o:AE, 6i7o:XE, 5it7:WW, 3j6x:64, 3j6y:64, 3j77:74, 3j78:74, 5juo:BA, 5jup:BA, 5jus:BA, 5jut:BA, 5juu:BA, 8k2d:LW, 8k82:LW, 5lyb:N4, 5lyb:n4, 5m1j:W5, 5mc6:AE, 5mei:7, 5mei:CY, 7mpi:AW, 7mpj:AW, 6n8m:j, 6n8n:j, 6n8o:j, 7n8b:AW, 5ndg:N4, 5ndv:N4, 5ndv:n4, 5ndw:N4, 5ndw:n4, 7nrc:LY, 7nrd:LY, 5obm:N4, 5obm:n4, 6oig:W, 5on6:7, 5on6:CY, 7osa:eL24, 7osm:eL24, 8p8m:QW, 8p8n:QW, 8p8u:QW, 8pfr:QW, 6q8y:AE, 6qik:v, 6qt0:v, 6qtz:v, 6r84:Y, 6r86:Y, 6r87:Y, 6ri5:v, 7rr5:LW, 6rzz:v, 6s05:v, 6s47:AY, 6snt:at, 6sv4:AE, 6sv4:XE, 6sv4:zE, 6t4q:LW, 5t62:j, 5t6r:j, 6t7i:LW, 6t7t:LW, 6t83:Wy, 6t83:H, 5tbw:7, 5tbw:CY, 6tb3:AE, 5tga:N4, 5tga:n4, 5tgm:N4, 5tgm:n4, 6tnu:AE, 7too:AL24, 7top:AL24, 4u3m:N4, 4u3m:n4, 4u3n:N4, 4u3n:n4, 4u3u:N4, 4u3u:n4, 4u4n:N4, 4u4n:n4, 4u4o:N4, 4u4o:n4, 4u4q:N4, 4u4q:n4, 4u4r:N4, 4u4r:n4, 4u4u:N4, 4u4u:n4, 4u4y:N4, 4u4y:n4, 4u4z:N4, 4u4z:n4, 4u50:N4, 4u50:n4, 4u51:N4, 4u51:n4, 4u52:N4, 4u52:n4, 4u53:N4, 4u53:n4, 4u55:N4, 4u55:n4, 4u56:N4, 4u56:n4, 4u6f:N4, 4u6f:n4, 6uz7:AW, 4v4b:BS, 4v6i:BZ, 4v7h:BS, 4v7r:BV, 4v7r:DV, 4v88:BW, 4v88:DW, 4v8t:W, 4v8y:BW, 4v8z:BW, 4v91:W, 6woo:W, 6xiq:W, 6xir:W, 8y0u:LW, 6z6j:LW, 6z6k:LW, 7zpq:BV, 7zrs:BV, 7zs5:BX, 7zuw:BV, 7zux:EV, 7zw0:LZ
10 5xy3:W 59 57 0.1889 0.2881 0.2982 0.040
11 4v4n:AV 66 48 0.1333 0.1818 0.2500 0.050 6skf:BY, 6skg:BY, 6th6:BY, 4v6u:BV
12 5an9:G 69 36 0.1556 0.2029 0.3889 0.15 5anb:G, 5anc:G, 6qkl:G
13 8c3a:7 118 57 0.1889 0.1441 0.2982 0.18 8c3a:BR, 8cq7:7, 8cq7:BR, 8cqw:7, 8cqw:BR, 8cre:7, 8cre:BR, 8oeq:7, 8oeq:BR, 7pzy:7, 7q08:7, 7q0f:7, 7q0p:7, 7q0r:7, 8q5i:7
14 7pwg:W 65 54 0.2000 0.2769 0.3333 0.21 8fru:W, 7pwo:W2
15 6zj3:Lm 66 61 0.2000 0.2727 0.2951 0.24
16 7olc:LW 133 55 0.1778 0.1203 0.2909 0.25 7old:LW, 8oo0:LW, 7r81:Y1, 7z3n:LW, 7z3o:LW
17 8hku:L24E 54 46 0.1444 0.2407 0.2826 0.29 8hkv:L24E, 8hky:L24E, 8hkz:L24E, 8hl1:L24E, 8hl2:L24E, 8hl3:L24E, 8hl4:L24E, 8hl5:L24E
18 8ifd:2Q 124 87 0.2667 0.1935 0.2759 0.34 7a01:l2, 8a3d:Q, 5aj0:AW, 8b5l:W, 8b6c:W, 9bdl:AL24, 9bdn:AL24, 9bdp:AL24, 8bpo:V2, 8btk:BW, 7cpu:LW, 7cpv:LW, 4d5y:W, 4d67:W, 9f1b:BW, 9f1c:BW, 9f1d:BW, 7f5s:LW, 6frk:W, 6ftg:W, 6fti:W, 6ftj:W, 8g5y:LW, 8g5z:LW, 8g60:LW, 8g61:LW, 8g6j:LW, 8glp:LW, 6gz3:AW, 6gz4:AW, 6gz5:AW, 8ife:2Q, 6ip5:2Q, 6ip6:2Q, 6ip8:2Q, 3j7o:W, 3j7p:W, 3j7q:W, 3j7r:W, 3j92:W, 3jag:W, 3jah:W, 3jai:W, 3jaj:W, 3jan:W, 8jdj:b, 8jdk:b, 8jdl:b, 8jdm:b, 8k2c:LW, 5lks:LW, 6lqm:f, 6lsr:f, 7ls1:Q2, 7mdz:W, 7nfx:W, 7nwg:W, 7nwi:W, 7o7y:BW, 7o7z:BW, 7o80:BW, 7o81:BW, 7obr:W, 8ohd:LW, 8oj0:LW, 8oj5:LW, 8oj8:LW, 6ole:X, 6olf:X, 6olg:AW, 6oli:X, 6olz:AW, 6om0:X, 6om7:X, 7ow7:u, 7oya:W1, 7oyb:W1, 7oyc:W1, 7oyd:W, 8p2k:BW, 6p5i:AW, 6p5j:AW, 6p5k:AW, 6p5n:AW, 8q7z:BW, 8q87:BW, 8qfd:W, 7qgg:X, 8qoi:LW, 7qvp:LW, 7qvp:MW, 7qwq:W, 7qwr:W, 7qws:W, 6qzp:LW, 6r6p:W, 8rjb:W, 8rjc:W, 8rjd:W, 8scb:W, 6swa:U, 5t2c:Q, 6t59:W3, 7tm3:W, 7toq:AL24, 7tor:AL24, 7tut:W, 4ug0:LW, 4ujc:BW, 4ujd:AW, 4uje:CW, 4v6x:CW, 6w6l:X, 6xa1:LW, 7xnx:LW, 7xny:LW, 8xsx:LW, 8xsy:LW, 8xsz:LW, 6y0g:LW, 8y0w:LW, 8y0x:LW, 6y2l:LW, 6y57:LW, 6y6x:LW, 8yoo:LW, 8yop:LW, 6z6l:LW, 6z6m:LW, 6z6n:LW, 6zm7:LW, 6zme:LW, 6zmi:LW, 6zmo:LW, 6zvk:l2
19 3k3w:B 551 54 0.1444 0.0236 0.2407 0.43 3ml0:B
20 7ls2:Q2 110 59 0.2000 0.1636 0.3051 0.53 8bhf:J1, 6d90:W, 6d9j:W, 6hcf:W3, 6hcm:W3, 5lzs:W, 5lzt:W, 5lzu:W, 5lzv:W, 5lzw:W, 5lzx:W, 5lzy:W, 5lzz:W, 6mtb:W, 6mtc:W, 6mtd:W, 6mte:W, 7nwh:W, 6r5q:W, 6r6g:W, 6r7q:W, 6sgc:W2, 7ucj:W, 7uck:W, 7zjw:LZ, 7zjx:LZ
21 4v8p:BT 61 35 0.1333 0.1967 0.3429 0.88 4v8p:CT, 4v8p:ET, 4v8p:GT
22 7qiw:Y 62 62 0.2000 0.2903 0.2903 1.5 7qiz:Y
23 4v3p:LZ 75 56 0.1778 0.2133 0.2857 2.1 8azw:L, 8b2l:L3, 8ip8:OA, 8ipa:OA, 8ipb:OA, 8jiv:CW, 4v7e:CW
24 5u75:A 144 29 0.1111 0.0694 0.3448 3.9
25 4b18:A 427 22 0.1111 0.0234 0.4545 4.7 6wx9:A
26 3r7k:A 378 26 0.1111 0.0265 0.3846 5.2 3r7k:B, 3r7k:C, 3r7k:D
27 7uea:U 364 24 0.1444 0.0357 0.5417 5.3 3bsd:A, 3eni:A, 3eni:C, 8gwa:1, 8gwa:2, 8gwa:3, 8gwa:4, 8gwa:5, 8gwa:6, 5h8z:A, 5h8z:C, 6m32:E, 6m32:F, 6m32:G, 7uea:V, 7uea:W, 7ueb:U, 7ueb:V, 7ueb:W, 7ueb:X, 7ueb:Y, 7ueb:Z, 7z6q:E, 7z6q:F, 7z6q:G, 7z6q:H, 7z6q:I, 7z6q:J
28 6fwv:A 522 77 0.2111 0.0364 0.2468 5.6 6fwv:B
29 4uqa:A 391 50 0.1556 0.0358 0.2800 5.8 5a6l:A, 5a6m:A, 4ckq:A, 4uqc:A
30 3a15:B 362 48 0.1556 0.0387 0.2917 6.1 3a15:A, 3a15:C, 3a15:D, 3a16:A, 3a16:B, 3a16:C, 3a16:D, 3a17:A, 3a17:B, 3a17:C, 3a17:D, 3a17:E, 3a17:F, 3a17:G, 3a17:H, 3a18:A, 3a18:B, 3a18:C, 3a18:D
31 8esq:u 114 78 0.2111 0.1667 0.2436 6.3 8etc:u, 8eth:u, 8eti:u, 8etj:u, 8eug:u, 8eui:u
32 8iaa:B 383 29 0.1222 0.0287 0.3793 7.6 8ia9:A, 8ia9:B, 8iaa:A
33 8h97:A 619 69 0.2111 0.0307 0.2754 8.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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