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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDSYRIYSDMFDFAVDLRPNPDYSLIQETIALMGDFLAVR
GQNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLV
LYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSHMVQQIKQNINQNFLTSSKETVVSLV
EALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAVAKSSGAGGGDCGIALSFDAQSTKTLKNRWADLG
IELLYQERI

The query sequence (length=329) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3gon:A 329 329 1.0000 1.0000 1.0000 0.0
2 4hac:A 312 323 0.2340 0.2468 0.2384 5.39e-05 4hac:B, 6mde:A, 6mdf:A, 6mdf:B
3 8teb:A 306 118 0.1033 0.1111 0.2881 8.22e-04
4 4ut4:A 345 47 0.0578 0.0551 0.4043 0.63 4ut4:B, 4utg:A, 4utg:B
5 3bpt:A 362 132 0.1094 0.0994 0.2727 1.3
6 7x81:A 145 67 0.0578 0.1310 0.2836 1.3 7x81:B, 7x86:A, 7x86:B, 7x86:C, 7x86:D
7 8ykv:R 271 124 0.0942 0.1144 0.2500 1.7
8 4zme:A 262 26 0.0334 0.0420 0.4231 1.7 5dyj:A, 5dyj:B, 5e4h:A, 5e4h:B, 5e4h:C, 5e4h:D, 5e4h:E, 5e4h:F, 5e4h:G, 5e4h:H, 5e9e:A, 5e9e:B, 3lkm:A, 3lla:A, 3lla:B, 3lmh:A, 3lmh:B, 3lmi:A, 3lmi:B, 3lmi:C, 3lmi:D, 3pdt:A, 4zme:B, 4zmf:A, 4zmf:B, 4zs4:A, 4zs4:B
9 4zq0:A 234 63 0.0638 0.0897 0.3333 2.6 4zq0:B, 4zq0:C, 4zq0:D
10 7sn8:D 399 117 0.1033 0.0852 0.2906 5.0
11 8p5e:5 695 99 0.0729 0.0345 0.2424 5.0 6eyc:5, 6f0l:D, 6f0l:5, 3ja8:5, 8kg6:5, 8kg8:5, 8kg9:5, 7p30:5, 7p30:D, 7p5z:5, 7p5z:D, 8p62:5, 8p63:5, 7pmk:5, 6ptn:l, 6ptn:5, 6pto:k, 6pto:5, 7pt6:5, 7pt6:E, 7pt7:5, 7pt7:E, 7qhs:5, 6rqc:5, 6skl:5, 6u0m:5, 5u8s:5, 5u8t:5, 7v3u:5, 7v3u:E, 7v3v:5, 7v3v:E, 7w8g:5, 7w8g:E, 8xgc:5, 7z13:5, 7z13:d
12 2qyo:A 353 88 0.0790 0.0737 0.2955 5.1 2qyo:B
13 3fkq:A 354 49 0.0547 0.0508 0.3673 6.1
14 8any:6 354 41 0.0426 0.0395 0.3415 6.5 6i9r:6, 8k2a:Ll, 8k2b:Ll, 7l08:6, 7l20:6, 7odr:6, 7ods:6, 7odt:6, 7og4:6, 8oir:Bn, 8oit:Bn, 8pk0:6, 7po4:6, 7qi4:6, 7qi5:6, 7qi6:6, 8qsj:6, 8qu1:6, 6vlz:6, 6vmi:6, 8xt0:Ll, 8xt1:Ll, 8xt2:Ll, 8xt3:Ll, 6zm5:6, 6zm6:6, 6zs9:6, 6zsa:6, 6zsb:6, 6zsc:6, 6zsd:6, 6zse:6, 6zsg:6
15 4v5z:B6 113 25 0.0304 0.0885 0.4000 6.6 7a01:13, 8a3d:W, 5aj0:Ac, 8b5l:c, 8b6c:c, 9bdl:AL30, 9bdn:AL30, 9bdp:AL30, 7bhp:Lc, 8bhf:P1, 8bpo:b2, 8btk:Bc, 7cpu:Lc, 7cpv:Lc, 4d5y:c, 4d67:c, 6d90:c, 6d9j:c, 9f1b:Bc, 9f1c:Bc, 9f1d:Bc, 7f5s:Lc, 8fky:LO, 8fkz:LO, 8fl2:LO, 8fl3:LO, 8fl4:LO, 8fl6:LO, 8fl7:LO, 8fl9:LO, 8fla:LO, 8flb:LO, 8flc:LO, 8fld:LO, 8fle:LO, 8flf:LO, 6frk:c, 6ftg:c, 6fti:c, 6ftj:c, 8g5y:Lc, 8g5z:Lc, 8g60:Lc, 8g61:Lc, 8g6j:Lc, 8glp:Lc, 6gz3:Ac, 6gz4:Ac, 6gz5:Ac, 6hcf:c3, 6hcj:c3, 6hcm:c3, 6hcq:c3, 8idt:E, 8idy:E, 8ie3:E, 8ifd:2W, 8ife:2W, 8ine:E, 8inf:E, 8ink:E, 6ip5:2W, 6ip6:2W, 6ip8:2W, 8ipd:E, 8ipx:E, 8ipy:E, 8ir1:E, 8ir3:E, 3j7o:c, 3j7p:c, 3j7q:c, 3j7r:c, 3j92:c, 3jag:c, 3jah:c, 3jai:c, 3jaj:c, 3jan:c, 8jdj:h, 8jdk:h, 8jdl:h, 8jdm:h, 8k2c:Lc, 5lks:Lc, 6lqm:E, 6lsr:E, 6lss:E, 7ls1:W2, 7ls2:W2, 6lu8:E, 5lzs:c, 5lzt:c, 5lzu:c, 5lzv:c, 5lzw:c, 5lzx:c, 5lzy:c, 5lzz:c, 7mdz:c, 6mtb:c, 6mtc:c, 6mtd:c, 6mte:c, 7nfx:c, 7nwg:c3, 7nwh:c, 7nwi:c, 7o7y:Bc, 7o7z:Bc, 7o80:Bc, 7o81:Bc, 7obr:c, 8ohd:Lc, 8oj0:Lc, 8oj5:Lc, 8oj8:Lc, 6ole:d, 6olf:d, 6olg:Ac, 6oli:d, 6olz:Ac, 6om0:d, 6om7:d, 7ow7:W, 7oya:c1, 7oyb:c1, 7oyc:c1, 7oyd:c, 8p2k:Bc, 6p5i:Ac, 6p5j:Ac, 6p5k:Ac, 6p5n:Ac, 8q7z:Bc, 8q87:Bc, 8qfd:c, 7qgg:d, 8qoi:Lc, 7qvp:Lc, 7qvp:Mc, 7qwq:c, 7qwr:c, 7qws:c, 6qzp:Lc, 6r5q:c, 6r6g:c, 6r6p:c, 6r7q:c, 8rjb:c, 8rjc:c, 8rjd:c, 8scb:c, 6sgc:c2, 6swa:a, 5t2c:W, 6t59:c3, 7tm3:c, 7toq:AL30, 7tor:AL30, 7tut:c, 7ucj:c, 7uck:c, 4ug0:Lc, 4ujc:Bc, 4ujd:Ac, 4uje:Cc, 4v6x:Cc, 6w6l:d, 6xa1:Lc, 7xnx:Lc, 7xny:Lc, 8xsx:Lc, 8xsy:Lc, 8xsz:Lc, 6y0g:Lc, 8y0w:Lc, 8y0x:Lc, 6y2l:Lc, 6y57:Lc, 6y6x:Lc, 8yoo:Lc, 8yop:Lc, 6z6l:Lc, 6z6m:Lc, 6z6n:Lc, 7zjw:Lf, 7zjx:Lf, 6zm7:Lc, 6zme:Lc, 6zmi:Lc, 6zmo:Lc, 6zvk:13
16 8odw:A 612 73 0.0729 0.0392 0.3288 7.5 8odw:B
17 5vj7:B 282 61 0.0547 0.0638 0.2951 7.9
18 5aj4:Bb 354 41 0.0456 0.0424 0.3659 8.0 6gaw:Bb, 6gb2:Bb, 7nqh:Bb, 7nql:Bb, 7nsh:Bb, 7nsi:Bb, 7nsj:Bb, 8oin:Bn, 8oiq:Bn, 6ydp:Bb, 6ydw:Bb
19 6j7n:A 290 208 0.1429 0.1621 0.2260 9.9 6j7o:A, 6j7p:A, 6j7q:A, 6j7r:A, 6j7s:A, 6j7t:A, 8xhr:A, 8xhr:B, 8xhr:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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