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BioLiP
>protein
MHVTIEQAEKAIQAARAKAVELGTQMCIAIVDSGGNLKAFHRMDGAWVGSIDIAQKKAKTAVFFGMKTGQIGALSQPGGS
LYGIEHSNQGLITFPGGIPIVDADGEMSGAIGVSGSSVENDDAVALAGASAIGDTEL

The query sequence (length=137) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6c0z:A 137 137 1.0000 1.0000 1.0000 1.14e-96 6c0z:C, 6c0z:D
2 5cx7:E 139 122 0.3358 0.3309 0.3770 2.72e-10 5cx7:A, 5cx7:B, 5cx7:C, 5cx7:D, 5cx7:F, 5cx7:G, 5cx7:H, 5cx7:I, 5cx7:J, 5cx7:K, 5cx7:L, 5cx7:M, 5cx7:N, 5cx7:O, 5cx7:P
3 3fpv:A 141 133 0.3358 0.3262 0.3459 7.24e-07 3fpv:B, 3fpv:C, 3fpv:D, 3fpv:E, 3fpv:G, 3fpv:F, 3fpv:H
4 9bh5:AH 192 36 0.1022 0.0729 0.3889 0.70 9cai:AH
5 4hyv:A 498 89 0.1971 0.0542 0.3034 0.94 4hyv:B, 4hyw:B, 4hyw:A, 4kct:B, 4kct:A, 4kcu:A, 4kcu:B, 4kcv:B, 4kcv:A, 4kcw:A, 4kcw:B
6 8bja:A 1563 26 0.0803 0.0070 0.4231 2.9
7 6su2:A 498 89 0.1752 0.0482 0.2697 4.1 6su2:B, 6su2:C, 6su2:D
8 8om2:5 291 46 0.1241 0.0584 0.3696 6.2 8d8j:5, 8d8k:5, 8d8l:5, 8om3:5, 8om4:5
9 5mq6:A 636 59 0.1460 0.0314 0.3390 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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