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BioLiP
>protein
MHTTLFFSNRTQAVRLPKSISFPEDVKHVEIIAVGRSRIITPVGESWDSWFDGEGASTDFMSTREQPA

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ifm:F 68 68 1.0000 1.0000 1.0000 2.69e-46 6ifm:H, 6ifm:B, 6ifm:D
2 3zvk:F 78 50 0.2647 0.2308 0.3600 4.29e-06 3zvk:E, 3zvk:G, 3zvk:H
3 8uxl:A 4232 50 0.1765 0.0028 0.2400 1.6 7u9q:A, 7u9q:D, 7u9q:B, 7u9q:C, 7u9r:A, 7u9r:D, 7u9r:B, 7u9r:C, 7u9t:A, 7u9t:D, 7u9t:B, 7u9t:C, 7u9x:A, 7u9x:B, 7u9x:C, 7u9x:D, 7u9z:A, 7u9z:B, 7u9z:C, 7u9z:D, 7ua1:A, 7ua1:B, 7ua1:C, 7ua1:D, 7ua5:A, 7ua5:B, 7ua5:C, 7ua5:D, 7ua9:A, 7ua9:B, 7ua9:C, 7ua9:D, 8uq2:A, 8uq2:B, 8uq2:C, 8uq2:D, 8uq3:A, 8uq3:B, 8uq3:C, 8uq3:D, 8uq4:A, 8uq4:B, 8uq4:C, 8uq4:D, 8uq5:A, 8uq5:B, 8uq5:C, 8uq5:D, 8uxc:A, 8uxc:B, 8uxc:C, 8uxc:D, 8uxe:A, 8uxe:B, 8uxe:C, 8uxe:D, 8uxf:A, 8uxf:B, 8uxf:C, 8uxf:D, 8uxg:A, 8uxg:B, 8uxg:C, 8uxg:D, 8uxl:B, 8uxl:C, 8uxl:D, 8uxm:A, 8uxm:B, 8uxm:C, 8uxm:D
4 7ua3:A 4443 50 0.1765 0.0027 0.2400 1.6 7ua3:B, 7ua3:C, 7ua3:D, 7ua4:A, 7ua4:B, 7ua4:C, 7ua4:D
5 8uxh:A 4004 50 0.1765 0.0030 0.2400 1.7 8uxh:B, 8uxh:C, 8uxh:D, 8uxi:A, 8uxi:B, 8uxi:C, 8uxi:D
6 5l6l:D 84 22 0.1471 0.1190 0.4545 1.9 5l6l:A, 5l6l:E, 5l6l:H
7 8dvv:A 3886 50 0.1765 0.0031 0.2400 3.8 8dvv:B, 8dvv:C, 8dvv:D
8 8dty:A 4004 50 0.1765 0.0030 0.2400 3.9 8dty:B, 8dty:C, 8dty:D
9 3lxv:A 200 60 0.2059 0.0700 0.2333 4.7 3lxv:B, 3lxv:C, 3mfl:A, 3mfl:B, 3mfl:C, 3mi5:A, 3mi5:B, 3mi5:C, 3mi5:D, 3mi5:E, 3mi5:F, 3pcb:F, 3pce:C, 3pce:E, 3pcf:A, 3pcf:B, 3pcf:C, 3pcf:D, 3pcf:E, 3pcf:F, 3pcg:C, 3pcg:D, 3pch:A, 3pch:B, 3pch:C, 3pch:D, 3pch:E, 3pci:A, 3pci:B, 3pci:C, 3pci:D, 3pci:E, 3pci:F, 3pcl:A, 3pcl:F, 3pcm:F, 3pcn:A, 3pcn:C, 3pcn:D, 3pcn:F, 3t67:A, 3t67:B, 3t67:C, 4who:A, 4whp:C, 4whq:A, 4whq:E, 4whq:C, 4whr:A, 4whr:E, 4whr:C, 4whs:A, 4whs:E, 4whs:C
10 4oue:A 459 30 0.1324 0.0196 0.3000 4.7 4oue:B, 4ozo:A, 4ozo:B
11 3ia7:A 397 48 0.2500 0.0428 0.3542 5.6 3ia7:B
12 7zm7:A 711 25 0.1471 0.0141 0.4000 6.6 7zmb:A, 7zmg:A
13 3qfu:A 379 28 0.1765 0.0317 0.4286 6.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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