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BioLiP
>protein
MHQDYRELSLDELESVEKQTLRTIVQALQQYSKEAKSIFETTAADSSGEVIVLAEDITQYALEVAETYPINRRFAGFIDY
KRVRWLPSPHGLLPQVLLVDAKASTEKNRDTLQRSQLPMDAEFRNTSSGEVVTMEAGVIPHLMLQSANDGVLPAVTTSIF
VHFYYRELKDVEGRYRELKSIYVLSLPHARLKQRYNPDPDTSFFGAGKHSPARGEVARIRVYFDRLKEACPWRLQELHYS
ADSEYTQPRWRDLNDAGHEVTKEFLFLER

The query sequence (length=269) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2ezv:B 269 269 1.0000 1.0000 1.0000 0.0 2ezv:A, 2f03:A, 2f03:C
2 8fkb:A 424 38 0.0595 0.0377 0.4211 0.27 6cvc:A, 8fjo:A, 8flo:A, 8gdi:A
3 8dty:A 4004 101 0.1004 0.0067 0.2673 0.44 8dty:B, 8dty:C, 8dty:D
4 6wou:A 3921 101 0.1004 0.0069 0.2673 0.45 6wou:B, 6wou:C, 6wou:D, 6wov:A, 6wov:B, 6wov:C, 6wov:D
5 8dvv:A 3886 101 0.1004 0.0069 0.2673 0.46 8dvv:B, 8dvv:C, 8dvv:D
6 8dtz:A 4061 101 0.1004 0.0066 0.2673 0.47 8dtz:B, 8dtz:C, 8dtz:D
7 6t0f:A 431 38 0.0595 0.0371 0.4211 0.59 6t0f:B, 6t0f:C, 6t0f:D, 6t0g:A, 6t0h:A, 6t0j:A, 6t0k:A, 6t0l:A, 2wm4:A, 2wm5:A, 7zb9:A
8 2y65:C 343 43 0.0669 0.0525 0.4186 0.64 2y5w:A, 2y5w:B, 2y65:D, 2y65:B, 2y65:A
9 7ua3:A 4443 87 0.0855 0.0052 0.2644 1.4 7ua3:B, 7ua3:C, 7ua3:D, 7ua4:A, 7ua4:B, 7ua4:C, 7ua4:D
10 5hv1:A 847 25 0.0409 0.0130 0.4400 2.7 5hv3:A
11 5fbs:A 787 25 0.0409 0.0140 0.4400 2.7
12 5fbt:A 769 25 0.0409 0.0143 0.4400 2.8
13 5fbu:A 733 25 0.0409 0.0150 0.4400 3.1
14 7eqh:A 212 45 0.0595 0.0755 0.3556 3.3 7eqh:B
15 1zl9:A 207 84 0.0743 0.0966 0.2381 3.5 1zl9:B
16 2f2g:A 215 38 0.0520 0.0651 0.3684 3.8 2f2g:B, 2q4x:A, 2q4x:B
17 7cka:A 211 45 0.0632 0.0806 0.3778 4.4
18 2cxx:A 184 28 0.0446 0.0652 0.4286 5.3 2cxx:B, 2cxx:C
19 6dre:A 365 124 0.1190 0.0877 0.2581 5.8 6drh:C
20 5z1a:A 655 20 0.0409 0.0168 0.5500 8.6
21 5hh9:A 390 52 0.0632 0.0436 0.3269 9.0 5hh9:B, 5i90:A, 5i90:B
22 6ffl:A 383 52 0.0595 0.0418 0.3077 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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