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BioLiP
>protein
MHNIPVYRDITHGNRQMTVIRKVEGDIWALQKDVEDFLSPLLGKTPVTQVNEVTGTLRVKGYFDQQLKAWLLEKGF

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8any:g 134 76 0.9605 0.5448 0.9605 2.52e-51 7a5f:g3, 7a5g:g3, 7a5h:g, 7a5i:g3, 7a5j:g, 7a5k:g3, 5aj4:Bl, 4ce4:l, 6gaw:Bl, 6gb2:Bl, 6i9r:g, 3j7y:g, 3j9m:g, 8k2a:Lw, 8k2b:Lw, 7l08:g, 7l20:g, 7nqh:Bl, 7nql:Bl, 7nsh:Bl, 7nsi:Bl, 7nsj:Bl, 6nu2:g, 6nu3:g, 7o9k:g, 7o9m:g, 7odr:g, 7ods:g, 7odt:g, 7of0:g, 7of2:g, 7of3:g, 7of4:g, 7of5:g, 7of6:g, 7of7:g, 7og4:g, 7oi6:g, 7oi7:g, 7oi8:g, 7oi9:g, 7oia:g, 7oib:g, 7oic:g, 7oid:g, 7oie:g, 8oin:Bx, 8oiq:Bx, 8oir:Bx, 8oit:Bx, 5ool:g, 5oom:g, 7pd3:g, 8pk0:g, 7po4:g, 7qh6:g, 7qh7:g, 7qi4:g, 7qi5:g, 7qi6:g, 8qsj:g, 8qu5:g, 6vlz:g, 6vmi:g, 8xt0:Lw, 8xt1:Lw, 8xt2:Lw, 8xt3:Lw, 6ydp:Bl, 6ydw:Bl, 6zm5:g, 6zm6:g, 6zs9:g, 6zsa:g, 6zsb:g, 6zsc:g, 6zsd:g, 6zse:g, 6zsg:g
2 6ywe:7 84 75 0.3289 0.2976 0.3333 1.75e-04 6yws:7, 6ywv:7, 6ywx:7, 6ywy:7
3 6z1p:AL 145 75 0.2763 0.1448 0.2800 3.46e-04
4 3j6b:7 106 43 0.2368 0.1698 0.4186 0.002 5mrc:7, 5mre:7, 5mrf:7
5 8kgn:A 1190 37 0.1711 0.0109 0.3514 1.1 8j9v:A, 8j9v:B, 8j9w:B, 8j9w:A, 8j9x:A, 8j9x:B, 8ja1:A, 8ja2:A, 8kgm:A, 8kgm:B, 8kgn:B, 8kgq:A, 8kgq:B, 8kgr:A, 8kgr:B, 8kgs:A, 8kgt:A, 8wwo:A, 8wwo:B, 8wwo:C, 8wwo:D, 8xrf:A, 8xrf:B, 8xrg:A, 8xrh:A, 8xri:A, 8xri:B, 8yge:A, 8yge:B
6 3t6c:A 415 38 0.1579 0.0289 0.3158 1.5 3t6c:B
7 6klc:A 1436 45 0.1711 0.0091 0.2889 3.2
8 7ela:A 1402 45 0.1711 0.0093 0.2889 3.2
9 7ckl:A 1415 45 0.1711 0.0092 0.2889 3.2
10 4ihc:B 395 38 0.1447 0.0278 0.2895 3.8 4ihc:C, 4ihc:D, 4ihc:E, 4ihc:F, 4ihc:H
11 2dyt:A 213 25 0.1579 0.0563 0.4800 4.1
12 8rch:A 2036 53 0.1974 0.0074 0.2830 5.8 8rch:B, 8rck:B, 8rcn:B
13 6zwm:B 2185 53 0.1974 0.0069 0.2830 5.9 6zwm:A
14 6m87:L 216 22 0.1447 0.0509 0.5000 5.9 6m87:B, 6m87:H, 6m87:F, 6m87:D, 6m87:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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