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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNSC

The query sequence (length=77) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4qu7:A 81 77 1.0000 0.9506 1.0000 1.27e-54 4qu7:B, 4qu7:D
2 2kg1:A 105 76 0.6364 0.4667 0.6447 5.86e-33
3 2kg0:A 92 76 0.4286 0.3587 0.4342 1.46e-15
4 2kfy:A 102 74 0.3247 0.2451 0.3378 2.35e-10
5 7vki:A 113 78 0.3766 0.2566 0.3718 2.45e-09
6 4qu6:A 99 76 0.2727 0.2121 0.2763 2.49e-07
7 2yka:A 124 51 0.2597 0.1613 0.3922 6.44e-05
8 6r5k:H 394 43 0.2078 0.0406 0.3721 0.057 6r5k:D, 6r5k:F
9 3lqv:B 115 57 0.1818 0.1217 0.2456 0.45 2f9j:B, 3lqv:A, 7q4o:F, 8qo9:B6, 8qxd:B6, 8qzs:B6, 8r08:B6, 8r09:B6, 8r0a:B6, 8r0b:B6, 8rm5:B6
10 1jot:A 133 31 0.1558 0.0902 0.3871 1.7 3lly:A, 3llz:A, 3lm1:A, 3lm1:E, 3lm1:M, 3lm1:C, 3lm1:G, 3lm1:K, 3lm1:I, 3lm1:O
11 1js8:A 382 46 0.1688 0.0340 0.2826 2.4 1js8:B
12 2zjs:Y 415 26 0.1558 0.0289 0.4615 3.7
13 6edk:A 193 46 0.1948 0.0777 0.3261 3.8 6ci4:A, 6ci5:A
14 5kag:D 423 25 0.1558 0.0284 0.4800 4.8 5kag:A, 5kag:B, 5kag:C, 5kag:E, 5kag:F, 5kag:G, 5kag:H, 5kag:I, 5kag:J, 5kag:K, 5kag:L, 5kah:A, 5kah:B, 5kah:C, 5kah:D, 5kah:E, 5kah:F, 5kah:G, 5kah:H, 5kah:I, 5kah:J, 5kah:K, 5kah:L, 5kaj:A, 5kaj:B, 5kaj:C, 5kaj:D, 5kaj:E, 5kaj:F, 5kaj:G, 5kaj:H, 5kaj:I, 5kaj:J, 5kaj:K, 5kaj:L, 2np9:A, 2np9:B, 2np9:C, 2pg8:A, 2pg8:B, 2pg8:C, 4ylh:A, 4ylh:B, 4ylh:C, 4ylh:D, 4ylh:E, 4ylh:F, 4ylh:G, 4ylh:H, 4ylh:I, 4ylh:J, 4ylh:K, 4ylh:L
15 7slp:B 321 25 0.1558 0.0374 0.4800 5.1 6d12:A, 6d12:B, 7slq:B, 4wkr:A, 4wkr:B
16 5mqf:o 223 54 0.2338 0.0807 0.3333 6.8 6id1:y, 7w59:y, 7w5a:y, 7w5b:y
17 4mmh:A 637 32 0.1429 0.0173 0.3438 8.3 4mmi:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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