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BioLiP
>protein
MHFNELRISQDNRFLIIDVSVDNQDYFEDVLLDSIVIDTQDTFVMNGPSDNPLYIYNVEDAYDTQQMKNVRLELNIQDLK
VSPCSTMFFVYVKSKGTPSTDTPCGFDKDQILGTVINLQPIYKQTLKYLKEVECDCNIPKGFIDMILKLKAIELCVRTGN
YPQAIKYWNKFFIKNNCKSPTSNCGCYG

The query sequence (length=188) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ckb:THA016 188 188 1.0000 1.0000 1.0000 1.58e-139 8ckb:O011, 8ckb:O002, 8ckb:O013, 8ckb:O004, 8ckb:O019, 8ckb:O003, 8ckb:O006, 8ckb:O008, 8ckb:O015, 8ckb:O001, 8ckb:O010, 8ckb:O009, 8ckb:O012, 8ckb:O005, 8ckb:O014, 8ckb:O018, 8ckb:O023, 8ckb:O017, 8ckb:O020, 8ckb:O007, 8ckb:O022, 8ckb:O021, 8ckb:O024, 7qoj:H, 7qol:H, 7qol:G, 7qol:Z
2 8w8g:C 208 38 0.0585 0.0529 0.2895 5.5 3bqo:A, 8w8g:A, 8w8g:B, 8w8g:D, 5wir:B, 5wir:A, 5xup:A, 5xup:B
3 6j11:F 120 21 0.0532 0.0833 0.4762 6.2
4 7rd0:A 482 39 0.0798 0.0311 0.3846 6.2
5 2sam:A 99 59 0.0798 0.1515 0.2542 6.2 1siv:A, 1siv:B, 1tcw:A, 1tcw:B, 1yti:A, 1ytj:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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