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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MHFNELRISQDNRFLIIDVSVDNQDYFEDVLLDSIVIDTQDTFVMNGPSDNPLYIYNVEDAYDTQQMKNVRLELNIQDLK
VSPCSTMFFVYVKSKGTPSTDTPCGFDKDQILGTVINLQPIYKQTLKYLKEVECDCNIPKGFIDMILKLKAIELCVRTGN
YPQAIKYWNKFFIKNNC

The query sequence (length=177) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ckb:THA016 188 177 1.0000 0.9415 1.0000 5.53e-130 8ckb:O011, 8ckb:O002, 8ckb:O013, 8ckb:O004, 8ckb:O019, 8ckb:O003, 8ckb:O006, 8ckb:O008, 8ckb:O015, 8ckb:O001, 8ckb:O010, 8ckb:O009, 8ckb:O012, 8ckb:O005, 8ckb:O014, 8ckb:O018, 8ckb:O023, 8ckb:O017, 8ckb:O020, 8ckb:O007, 8ckb:O022, 8ckb:O021, 8ckb:O024, 7qoj:H, 7qol:H, 7qol:G, 7qol:Z
2 7rd0:A 482 39 0.0847 0.0311 0.3846 3.7
3 6j11:F 120 21 0.0565 0.0833 0.4762 4.8
4 2sam:A 99 59 0.0847 0.1515 0.2542 5.0 1siv:A, 1siv:B, 1tcw:A, 1tcw:B, 1yti:A, 1ytj:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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