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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MHCPFCRHPDSRVVDSRTTDDGTSIRRRRQCPDCSRRFTTVETCSLMVVKRSGVTEPFSRTKVINGVRKACQGRPVTEDA
LAQLGQRVEEAVRATGSAELTTHDVGLAILGPLQELDLVAYLRFASVYRAFDSLEDFEAAIAELRET

The query sequence (length=147) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7p37:A 147 147 1.0000 1.0000 1.0000 4.53e-106 7p37:E, 7p37:I, 7p37:C, 7p37:G, 7p37:K, 7p37:B, 7p37:F, 7p37:J, 7p37:D, 7p37:H, 7p37:L, 7p3f:A, 7p3f:C, 7p3f:B, 7p3f:D, 7p3q:A, 7p3q:C, 7p3q:D, 7p3q:E, 7p3q:F, 7p3q:G, 7p3q:B, 7p3q:H
2 2jne:A 71 46 0.0952 0.1972 0.3043 0.22
3 6j7u:A 247 42 0.1020 0.0607 0.3571 0.84 6j7u:B, 6j7u:C, 6j7u:D
4 3nyq:A 460 81 0.2041 0.0652 0.3704 0.89 3nyr:A
5 1gjq:A 541 41 0.1088 0.0296 0.3902 1.2 1bl9:A, 1bl9:B, 1gjq:B, 5guw:M, 5guw:N, 1hzu:A, 1hzv:A, 1n15:A, 1n15:B, 1n50:A, 1n50:B, 1n90:A, 1n90:B, 1nir:A, 1nir:B, 1nno:A, 1nno:B, 6tpo:A, 6tsi:A, 6tsi:B
6 6pek:D 293 69 0.1497 0.0751 0.3188 3.4 6pek:A, 6pek:B, 6pek:C, 6pek:E, 6pen:A, 6pen:B, 6pen:C, 6pen:D, 6pen:E, 5z6r:A
7 3jb9:A 1964 26 0.0680 0.0051 0.3846 4.3
8 6hiv:AE 293 23 0.0612 0.0307 0.3913 6.4 6hix:AE
9 1m7j:A 474 46 0.0952 0.0295 0.3043 6.7 1rjp:A, 1rjq:A, 1rjr:A, 1rk5:A, 1rk6:A, 1v4y:A, 1v51:A
10 7agj:A 731 46 0.1020 0.0205 0.3261 9.6 7agj:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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