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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MHAVSVGKGSYATEFPEIDFGGINDPGFRDQQGEPPATIYRSDRVTGPMQTNSWWGSLAVDRFSMNQYPHPFSVRHRAEG
LHVFYDAPHNMVVHENREAGTWHIHGAIGTDFTIKHSGTANFEQAVVDDYNDWYVRGLLENGAHQMAITYGVGSPYIFVE
YEDGSAVLDFDIAPDVWEMNGHVIGFSTHDHKHYAAFAPPGQNWSGIGSKTLTNNADYIAIAKLPEKDGNMLAKFEQYAY
SVVRDAVADWTYDEATGTVTTTFEVTTEAKVQGAPDGTIFALYPHQYRHLASSSENQLLQNYQYEIIRGTMIGLEGKRFT
TELTYPGVLPSLPDLGDYDRERLIGYLHDATSDYPTGSDTYELGKYIGKLATLAPIADQMGEYELAEQFRGELKDILEDW
LQATNASGQLKGKNLFYYNENWGTILGYHAAHSSATRINDHHFHYGYFVKAAAEIARADQEWAKSENWGGMIDLLIRDFM
ADRDDDLFPYLRMFDPYSGNSWADGLATFDAGNNQESSSEAMHAWTNVILWAEATGNKALRDRAIYLYTTEMSAINEYFF
DVHQEIFPEEYGPEIVTINWGGKMDHATWWNSGKVEKYAINWLPFHGGSLYLGHHPDYVDRAYEELRRDIGSTDWNLWSN
LVWMYRAFTNPDDALQQMEASIDDYGLFDPGNEKIIERGSTKAQTYHWIHNLAELGRVDPTVTANHPIYAVFNKNGNRTY
IVYNFSDSPITVQFSDGHSIQVEPHSFNIGNG

The query sequence (length=752) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5upm:A 753 752 0.9987 0.9973 0.9987 0.0 5t4a:A, 5t4c:A, 5t4g:A, 5upi:A, 5upn:A, 5upo:A, 5v1w:A
2 6fop:A 717 755 0.4069 0.4268 0.4053 0.0
3 5xc2:D 648 329 0.1144 0.1327 0.2614 2.54e-15
4 5xc2:B 720 329 0.1144 0.1194 0.2614 3.45e-15 5xbz:A, 5xbz:B, 5xc2:A, 5xc2:C
5 6a6e:A 422 45 0.0199 0.0355 0.3333 2.0 6a6e:B, 6a6e:C, 6a6e:D, 6a6g:A, 6a6g:B
6 3inn:C 284 52 0.0279 0.0739 0.4038 2.5 3inn:A, 3inn:D
7 7abi:P 237 33 0.0173 0.0549 0.3939 5.9 7aav:P, 7abg:P
8 7lx0:G 751 65 0.0279 0.0280 0.3231 5.9 7lx0:a, 7lx0:A, 6pnj:A, 6pnj:G, 6pnj:a
9 4ari:A 821 54 0.0213 0.0195 0.2963 7.3 4arc:A, 4as1:A, 8pot:A, 3zjt:A, 3zju:A, 3zjv:A
10 3zgz:D 867 54 0.0213 0.0185 0.2963 7.8 2ajh:A, 2ajh:B, 2aji:A, 2aji:B, 4aq7:A, 4aq7:D, 4cqn:A, 4cqn:D, 5omw:A, 5omw:D, 5on2:A, 5on2:D, 5on3:A, 5on3:D, 5onh:A, 5onh:D, 3zgz:A
11 7dr0:A 739 65 0.0253 0.0257 0.2923 8.4 7dr1:A, 7dr2:aA, 7dr2:bA, 7dr2:cA, 7dr2:dA
12 6d41:B 579 176 0.0532 0.0691 0.2273 8.5 6d41:A, 6d6w:A, 6d6w:B, 6d6w:C, 6d6w:D, 6d7f:A, 6d7f:B, 6d7f:C, 6d7f:D, 6d7f:E, 6d7f:F
13 5xx1:G 735 157 0.0479 0.0490 0.2293 10.0 5xx1:B, 5xx1:C, 5xx1:D, 5xx1:E, 5xx1:F, 5xx1:H, 5xx1:I

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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