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BioLiP
>protein
MGSMVCDVCHHECETAKELESHRQSCINGQCPYCMTITEATESALQAHYSICKLTGR

The query sequence (length=57) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2k9h:A 57 57 1.0000 1.0000 1.0000 1.17e-37
2 5hou:A 171 38 0.1930 0.0643 0.2895 0.38 2ka4:A, 1l3e:B, 1l8c:A, 7lvs:B, 2lww:A, 1p4q:B, 7qgs:A, 1r8u:B, 1u2n:A
3 7aih:O 307 27 0.1930 0.0358 0.4074 2.0 7am2:O, 7ane:O
4 5ntd:G 520 28 0.2105 0.0231 0.4286 4.0 4efd:F, 5nsm:A, 5nsm:B, 5nsm:C, 5nsm:D, 5nsm:E, 5nsm:F, 5nsm:G, 5nsm:H, 5nsm:I, 5nsm:J, 5nsm:K, 5nsm:L, 5nsq:A, 5nsq:B, 5nsq:C, 5nsq:D, 5nsq:E, 5nsq:F, 5ntd:A, 5ntd:B, 5ntd:D, 5ntd:C, 5ntd:E, 5ntd:F, 5ntd:H, 5ntd:I, 5ntd:J, 5ntd:K, 5ntd:L
5 4fns:A 718 46 0.2281 0.0181 0.2826 5.6 4fns:B, 4fns:C, 4fns:D, 4fnt:C, 4fnt:B, 4fnt:A, 4fnt:D, 4fnu:A, 4fnu:B, 4fnu:C, 4fnu:D
6 7k01:0 754 30 0.1579 0.0119 0.3000 6.7 8cen:0, 8ceo:0, 6gym:0, 7k04:0, 7m2u:0, 7ml0:0, 7ml1:0, 7ml2:0, 7ml3:0, 7ml4:0, 7o4i:0, 7o4j:0, 7o4k:0, 7o4l:0, 7o72:0, 7o73:0, 7o75:0, 5oqj:0, 5oqm:0, 7zs9:0, 7zsa:0, 7zsb:0
7 8kdb:A 2117 44 0.2281 0.0061 0.2955 6.7 8kdc:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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