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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MGSMRICIFMARGLEGCGVTKFSLEQRDWFIKNGHEVTLVYAKDKSFTRTSSHDHKSFSIPVILAKEYDKALKLVNDCDI
LIINSVPATSVQEATINNYKKLLDNIKPSIRVVVYQHDHSVLSLRRNLGLEETVRRADVIFSHSDNGDFNKVLMKEWYPE
APTVYNFQPPMDIVKVRSTYWKDVSEINMNINRWIGRTTTWKGFYQMFDFHEKFLKPAGKSTVMEGLERSPAFIAIKEKG
IPYEYYGNREIDKMNLAPNQPAQILDCYINSEMLERMSKSGFGYQLSKLNQKYLQRSLEYTHLELGACGTIPVFWKSTGE
NLKFRVDNTPLTSHDSGIIWFDENDMESTFERIKELSSDRALYDREREKAYEFLYQHQDSSFCFKEQFDIITK

The query sequence (length=393) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1xv5:A 401 401 0.9949 0.9751 0.9751 0.0 1y6f:A, 1y6f:B, 1y6g:A, 1y6g:B, 1y8z:A
2 1ya6:A 380 391 0.9669 1.0000 0.9719 0.0 1y8z:B, 1ya6:B
3 3qay:A 180 47 0.0382 0.0833 0.3191 3.6 3qay:B, 3qay:C, 3qay:D
4 1kao:A 167 58 0.0483 0.1138 0.3276 3.7 2rap:A, 3rap:R, 3rap:S
5 7d6n:D 589 103 0.0738 0.0492 0.2816 4.0 7d6n:A, 7d6n:B, 7d6n:E, 7d6n:C, 7d6n:F, 7d6n:G, 7d6n:J, 7d6n:I, 7d6n:H
6 3c3d:A 306 35 0.0331 0.0425 0.3714 7.5 3c3d:B, 3c3d:C, 3c3d:D, 3c3e:A, 3c3e:B, 3c3e:C, 3c3e:D
7 7umo:A 169 113 0.0789 0.1834 0.2743 8.3 6h6a:D, 6h6a:G, 6h6a:J, 5l7k:A, 3rbq:A, 3rbq:B, 3rbq:C, 3rbq:D, 3rbq:E, 3rbq:F, 7umo:B, 7umo:C, 7umo:D, 7umo:E, 7umo:F
8 8dt6:C 381 46 0.0382 0.0394 0.3261 8.8 8dt6:A, 8dt6:B, 8dt6:D
9 3ryk:A 175 61 0.0458 0.1029 0.2951 9.1 3ryk:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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