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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MGSGLAKYLPGATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHD
YYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIEDPDGANFPWPN

The query sequence (length=145) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6gxg:B 147 145 1.0000 0.9864 1.0000 1.42e-107 6gxg:A, 6gxg:C, 6gxy:A, 6gxy:B, 6gxy:C
2 3s9f:A 144 141 0.5793 0.5833 0.5957 1.05e-61
3 1i5g:A 144 144 0.5862 0.5903 0.5903 3.88e-61
4 7miz:c 201 111 0.2069 0.1493 0.2703 6.95e-07 7miz:d, 7miz:e, 7miz:f, 7miz:g, 7miz:h, 7miz:j, 7miz:o, 7miz:p, 7miz:q, 7miz:r, 7miz:s, 7miz:t, 7miz:u, 7miz:v, 7miz:n, 7miz:m, 7tnq:c, 7tnq:d, 7tnq:o, 7tnq:p, 7tnq:r, 7tnq:t, 7tnq:u, 7tnq:v, 7tnq:e, 7tnq:m, 7tnq:f, 7tnq:h, 7tnq:i, 7tns:c, 7tns:d, 7tns:o, 7tns:s, 7tns:t, 7tns:v, 7tns:y, 7tns:m, 7tns:f, 7tns:g, 7tns:h
5 2yp6:A 143 105 0.2069 0.2098 0.2857 7.52e-07 2yp6:B, 2yp6:C, 2yp6:D
6 1nw2:A 105 105 0.2276 0.3143 0.3143 9.85e-07 1nw2:B, 1nw2:C, 1nw2:D, 1nw2:E, 1nw2:F, 1nw2:H
7 7miz:x 143 126 0.2138 0.2168 0.2460 1.39e-06 7miz:k, 7tnq:w, 7tnq:x
8 1v98:A 92 102 0.2000 0.3152 0.2843 1.05e-04 1v98:B
9 4hqs:A 135 109 0.2069 0.2222 0.2752 1.31e-04
10 4grf:A 140 122 0.2207 0.2286 0.2623 1.54e-04
11 6z7o:A 110 47 0.1172 0.1545 0.3617 0.005
12 3hxs:A 117 84 0.1517 0.1880 0.2619 0.007 3hyp:A
13 2xc2:A 110 30 0.0828 0.1091 0.4000 0.012 2xbq:A
14 3f3q:A 109 29 0.0759 0.1009 0.3793 0.022 3f3r:A, 3f3r:B
15 6slo:A 214 84 0.1379 0.0935 0.2381 0.038 6lur:B, 6lur:C, 6lur:D, 6lur:A, 6lur:E, 6slo:C, 6slo:D
16 6yt3:B 376 84 0.1379 0.0532 0.2381 0.055 4f6t:B, 6gu5:B, 6guj:B, 6gx4:B, 6h6w:B, 6h73:B, 6h74:B, 6h8b:B, 6h8h:B, 4ndo:B, 4ndp:B, 4ndq:B, 4ndr:B, 5o5w:B, 6ris:B, 6rj4:B, 6rj4:D, 6rj4:F, 6rkd:B, 6rkd:F, 6rkd:D, 6rkd:H, 6rkd:J, 6rkd:L, 6rke:B, 6rke:D, 6rke:F, 6rke:H, 6rke:J, 6rke:L, 7z5j:B, 7z5j:D, 7z5j:F, 7z5j:H, 7z5j:J, 7z5j:L, 7zqq:B, 7zr4:B, 7zse:B
17 5g31:A 105 49 0.1034 0.1429 0.3061 0.095
18 3lwa:A 167 51 0.0897 0.0778 0.2549 0.10
19 5e37:A 313 34 0.1034 0.0479 0.4412 0.13 5e37:C
20 4pom:A 107 29 0.0828 0.1121 0.4138 0.15 1cqg:A, 1cqh:A, 1mdi:A, 1mdj:A, 1mdk:A, 4pol:A, 4pol:B
21 7d6l:A 142 43 0.1103 0.1127 0.3721 0.15
22 3o6t:B 110 86 0.1655 0.2182 0.2791 0.15 3o6t:A, 3o6t:C, 3o6t:D
23 3p2a:A 145 22 0.0759 0.0759 0.5000 0.20 3p2a:B, 3p2a:C, 3p2a:D
24 7ysi:A 143 89 0.1448 0.1469 0.2360 0.34
25 7scd:A 371 83 0.1379 0.0539 0.2410 0.38 3bd9:A, 7sce:A
26 6i7s:B 462 33 0.0897 0.0281 0.3939 0.46 6i7s:A
27 8esq:q 341 65 0.1379 0.0587 0.3077 0.80
28 3clr:D 319 30 0.0828 0.0376 0.4000 2.7 3cls:D, 3clt:D, 3clu:D, 1o96:B, 1o96:D, 1o96:F, 1o96:Z, 1o97:D
29 7ljo:A 290 34 0.0828 0.0414 0.3529 2.9
30 8a1r:A 593 35 0.0897 0.0219 0.3714 3.3 8a1r:B, 7b02:A, 6fmu:A, 6fmz:A, 6fp4:A, 6ftc:A, 3h4k:A, 4la1:A, 4la1:B, 7npx:A, 7npx:B, 8pdd:A, 8pdd:B, 8pl0:A, 8pl0:B, 8pl1:A, 8pl1:B, 8pl2:A, 8pl2:B, 8pl3:A, 8pl3:B, 8pl4:A, 8pl4:B, 8pl5:A, 8pl5:B, 8pl6:A, 8pl7:A, 8pl7:B, 8pl8:A, 8pl9:A, 8pl9:B, 8pla:A, 8pla:B, 8plb:A, 8plb:B, 8plc:A, 8plc:B, 8pld:A, 8pld:B, 8ple:A, 8ple:B, 8plf:A, 8plf:B, 8plg:A, 8plh:A, 8pli:A, 8pli:B, 8plj:A, 8plj:B, 8plk:A, 8plk:B, 8pll:A, 8plm:A, 8pln:A, 8plo:A, 8plo:B, 8plp:A, 8plp:B, 8plq:A, 8plq:B, 8plr:A, 8plr:B, 8pls:A, 8pls:B, 8plt:A, 8plt:B, 8plu:A, 8plu:B, 8plv:A, 8plv:B, 8plw:A, 8plw:B, 8plx:A, 8plx:B, 8ply:A, 8ply:B, 6rtj:A, 6rtm:A, 6rto:A, 2v6o:A, 2x8c:A, 2x8c:B, 2x8g:A, 2x8h:A, 2x99:A, 6zlb:A, 6zlp:A, 6zp3:A, 6zst:A
31 5crw:A 242 64 0.1241 0.0744 0.2812 3.3
32 4c6h:A 291 62 0.1448 0.0722 0.3387 5.0
33 3idv:A 235 19 0.0690 0.0426 0.5263 5.1
34 7lui:A 180 35 0.0690 0.0556 0.2857 5.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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