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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MGRYSVKRYKTKRRTRDLDLIYNDLSTKESVQKLLNQPLDETKPGLGQHYCIHCAKYMETAIALKTHLKGKVHKRRVKEL
RGVPYTQEVSDAAAGYNLNKFLNRVQEITQS

The query sequence (length=111) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8hfr:ox 143 111 1.0000 0.7762 1.0000 1.60e-80 6ft6:I, 3jct:I, 6m62:I, 6n8j:I, 6n8k:I, 6n8l:I, 7ug6:I, 7uoo:I, 7uqb:I, 7uqz:I, 7v08:I, 6ylg:I, 6ylh:I, 6yly:I, 7z34:I
2 8pv1:Cb 101 90 0.3784 0.4158 0.4667 5.43e-22 8pv2:Cb, 8pv3:Cb, 8pv4:Cb, 8pv5:Cb, 8pv6:Cb, 8pv7:Cb, 8pv8:Cb, 8pvk:Cb, 8pvl:Cb
3 8fld:NP 108 90 0.3153 0.3241 0.3889 1.34e-14 8fl2:NP, 8fl3:NP, 8fl4:NP, 8fl6:NP, 8fl7:NP, 8fl9:NP, 8fla:NP, 8flb:NP, 8flc:NP, 8fle:NP, 8flf:NP, 8idt:9, 8idy:9, 8ie3:9, 8ine:9, 8inf:9, 8ink:9, 8ipd:9, 8ipx:9, 8ipy:9, 8ir3:9, 6lss:9, 6lu8:9, 1zr9:A
4 6g90:T 462 38 0.1081 0.0260 0.3158 0.001 7dco:u, 4dgw:A, 5nrl:T, 5zwm:u
5 6jig:A 480 42 0.1261 0.0292 0.3333 0.28 6lk4:A
6 5gjo:A 385 57 0.1622 0.0468 0.3158 1.3 5gjn:A, 5gjo:B, 5gjp:A
7 1xcr:A 313 39 0.1171 0.0415 0.3333 1.4 1xcr:B
8 2vrd:A 61 36 0.1081 0.1967 0.3333 1.7 4pjo:L, 4pjo:l, 4pjo:M, 4pjo:m, 6qx9:1C, 7vpx:N
9 1eep:A 314 42 0.1441 0.0510 0.3810 1.8
10 8w2o:B 178 32 0.1081 0.0674 0.3750 2.9
11 3qj4:A 335 34 0.1081 0.0358 0.3529 3.4 3qj4:B
12 1g8x:A 1009 54 0.1441 0.0159 0.2963 4.2 1g8x:B
13 8qzs:r 114 30 0.0901 0.0877 0.3333 4.7 7abf:N, 7abg:N, 7abi:N, 8h6k:4N, 5o9z:N, 8q7n:r, 8qpe:r
14 3khj:A 302 42 0.0901 0.0331 0.2381 5.0 3khj:E, 3khj:F, 3khj:G
15 6pjx:A 542 34 0.1351 0.0277 0.4412 5.2 4tnb:A, 4tnd:A, 8uap:A, 8uaq:A, 4wnk:A
16 1vei:A 175 33 0.1171 0.0743 0.3939 6.8 1uvh:A, 1uvh:B, 1uvh:C, 1uvh:D, 1veq:A, 1veq:J, 1veq:B, 1veq:C, 1veq:D, 1veq:E, 1veq:F, 1veq:L, 1veq:G, 1veq:H, 1veq:I, 1veq:K
17 1nf6:F 171 47 0.1441 0.0936 0.3404 7.3 1nf4:A, 1nf4:B, 1nf4:C, 1nf4:D, 1nf4:E, 1nf4:F, 1nf4:G, 1nf4:H, 1nf4:I, 1nf4:J, 1nf4:K, 1nf4:L, 1nf4:M, 1nf4:N, 1nf4:O, 1nf4:P, 1nf6:A, 1nf6:B, 1nf6:C, 1nf6:D, 1nf6:E, 1nf6:G, 1nf6:H, 1nf6:I, 1nf6:J, 1nf6:K, 1nf6:L, 1nf6:M, 1nf6:N, 1nf6:O, 1nf6:P, 1nfv:A, 1nfv:B, 1nfv:C, 1nfv:D, 1nfv:E, 1nfv:F, 1nfv:G, 1nfv:H, 1nfv:I, 1nfv:J, 1nfv:K, 1nfv:L, 1nfv:M, 1nfv:N, 1nfv:O, 1nfv:P
18 7z1m:O 570 40 0.1351 0.0263 0.3750 7.7 8bws:O, 6cnc:O, 6cnd:O, 6eu0:O, 6eu1:O, 6f44:O, 7z2z:O
19 4p5x:A 267 106 0.2703 0.1124 0.2830 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218