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BioLiP
>protein
MGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHN
INRPLTMKKEGIQTRNRKM

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4hca:A 99 99 1.0000 1.0000 1.0000 7.02e-71 4hc7:B
2 4hc7:A 108 107 0.9697 0.8889 0.8972 1.61e-65 3dfv:D, 3dfv:C, 3dfx:A, 3dfx:B, 4hc9:A
3 4hc7:A 108 51 0.2424 0.2222 0.4706 3.20e-10 3dfv:D, 3dfv:C, 3dfx:A, 3dfx:B, 4hc9:A
4 3vd6:C 96 97 0.8081 0.8333 0.8247 7.62e-50 2l6y:A, 2l6z:A, 3vek:C, 3vek:F, 1y0j:A
5 2gat:A 66 54 0.4343 0.6515 0.7963 2.95e-28 1gat:A, 1gau:A, 3gat:A
6 2m9w:A 63 52 0.4343 0.6825 0.8269 2.41e-27 8vg0:T, 8vg1:T
7 2m9w:A 63 42 0.2323 0.3651 0.5476 7.12e-11 8vg0:T, 8vg1:T
8 6zfv:A 63 43 0.4242 0.6667 0.9767 3.91e-27 1gnf:A
9 6zfv:A 63 40 0.2222 0.3492 0.5500 2.23e-10 1gnf:A
10 5o9b:A 68 45 0.4343 0.6324 0.9556 1.32e-26
11 5o9b:A 68 38 0.2222 0.3235 0.5789 2.98e-10
12 4gat:A 66 53 0.3232 0.4848 0.6038 6.47e-19 5gat:A, 6gat:A, 7gat:A, 2vus:I, 2vus:J, 2vus:K, 2vus:L, 2vus:M, 2vus:N, 2vus:O, 2vus:P, 2vut:I, 2vut:J, 2vut:K, 2vut:L, 2vut:M, 2vut:N, 2vut:O, 2vut:P, 2vuu:I, 2vuu:J, 2vuu:K, 2vuu:L, 2vuu:M, 2vuu:N, 2vuu:O, 2vuu:P
13 4gat:A 66 38 0.2222 0.3333 0.5789 4.02e-10 5gat:A, 6gat:A, 7gat:A, 2vus:I, 2vus:J, 2vus:K, 2vus:L, 2vus:M, 2vus:N, 2vus:O, 2vus:P, 2vut:I, 2vut:J, 2vut:K, 2vut:L, 2vut:M, 2vut:N, 2vut:O, 2vut:P, 2vuu:I, 2vuu:J, 2vuu:K, 2vuu:L, 2vuu:M, 2vuu:N, 2vuu:O, 2vuu:P
14 8j48:A 38 33 0.1919 0.5000 0.5758 3.59e-05 8j48:D
15 8j48:A 38 31 0.1717 0.4474 0.5484 9.96e-05 8j48:D
16 2kae:A 56 40 0.1616 0.2857 0.4000 4.47e-04
17 2kae:A 56 41 0.1616 0.2857 0.3902 0.008
18 6eu0:Z 339 51 0.1616 0.0472 0.3137 0.100 6f40:V, 6f41:V, 6f42:V, 6f44:V, 7q5b:Z
19 6cnb:R 522 27 0.1313 0.0249 0.4815 0.15 8cen:O, 8ceo:O, 6cnc:R, 6cnd:R, 6cnf:R, 6eu0:Y, 6f40:U, 6f41:U, 6f42:U, 6f44:U, 8ffz:H, 5fmf:Q, 5fyw:O, 5fz5:O, 6gyk:O, 6gyl:O, 6gym:O, 7ml0:O, 7ml1:O, 7ml2:O, 7ml4:O, 1ngm:A, 1ngm:E, 1ngm:I, 1ngm:M, 1nh2:A, 7o4i:O, 7o4j:O, 7o72:O, 7o73:O, 7o75:O, 7oh9:K, 7oha:K, 7ohb:K, 5oqj:O, 5oqm:O, 7q5b:Y, 1rm1:A, 5sva:j, 4v1n:O, 4v1o:O, 1ytb:A, 1ytb:B, 1ytf:A, 7z7n:D, 7zb5:D, 7zb5:G, 7zs9:O, 7zsa:O, 7zsb:O
20 2p57:A 124 45 0.1414 0.1129 0.3111 0.87
21 4l9m:A 522 66 0.2121 0.0402 0.3182 1.8
22 8ouw:6 707 41 0.1212 0.0170 0.2927 2.4
23 2crw:A 149 44 0.1414 0.0940 0.3182 2.4
24 8ouw:2 701 30 0.1313 0.0185 0.4333 2.6
25 7ml4:M 234 28 0.1010 0.0427 0.3571 2.7 5fyw:M, 5fz5:M
26 8h8j:C 283 52 0.1616 0.0565 0.3077 3.5
27 8cen:M 310 28 0.1010 0.0323 0.3571 4.0 8ceo:M, 5fmf:P, 6gyk:M, 6gyl:M, 6gym:M, 7ml0:M, 7ml1:M, 7ml2:M, 7o4i:M, 7o4j:M, 7o72:M, 7o73:M, 7o75:M, 5oqj:M, 5oqm:M, 7zs9:M, 7zsa:M, 7zsb:M
28 8s8h:l 134 38 0.1212 0.0896 0.3158 4.3 8cas:s, 6fyx:l, 6fyy:l, 6gsm:l, 6gsn:l, 3jap:l, 8s8i:l
29 4v1n:M 299 28 0.1010 0.0334 0.3571 4.3 4bbr:M, 4bbs:M, 4v1o:M
30 3k1f:M 185 28 0.1010 0.0541 0.3571 6.5
31 6g47:A 171 49 0.1515 0.0877 0.3061 7.5 6g47:C, 4xl8:A, 4xl8:B, 4xl8:C
32 6rax:2 605 33 0.1515 0.0248 0.4545 8.2 6raw:2, 6ray:2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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