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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MGNWATHVYVPYEAKEEFLDLLDVLLPHAQTYVPRLVRMKVFHLSLSQSVVLRHHWILPFVQALKARMTSFHRFFFTANQ
VKIYTNQEKTRTFIGLEVTSGHAQFLDLVSEVDRVMEEFNLTTFYQDPSFHLSLAWCVGDARLQLEGQCLQELQAIVDGF
EDAEVLLRVHTEQVRCKSGNKFFSMPLK

The query sequence (length=188) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6d2z:A 188 188 0.9947 0.9947 0.9947 1.05e-140 6d30:A, 6d31:A, 5v1m:A
2 4dwj:B 203 88 0.1223 0.1133 0.2614 1.8 2ccg:A, 2ccg:B, 2ccj:A, 2ccj:B, 4dwj:A, 4dwj:C, 4dwj:D, 4dwj:F, 4dwj:G, 4dwj:H, 4eaq:A, 4eaq:B, 4gfd:A, 4gfd:B, 4gsy:A, 4gsy:B, 4hdc:A, 4hdc:B, 4hej:A, 4hlc:A, 4hlc:B, 4hld:A, 4hld:B, 4qg7:A, 4qg7:B, 4qga:A, 4qga:B, 4qgf:A, 4qgf:B, 4qgg:A, 4qgg:B, 4qgh:A, 4qgh:B, 4xwa:A, 4xwa:B
3 1pj6:A 828 35 0.0638 0.0145 0.3429 3.7 3gsi:A, 1pj5:A, 1pj7:A
4 2a2q:H 254 115 0.1596 0.1181 0.2609 4.5 2aei:H, 2aer:H, 2b7d:H, 2b8o:H, 2bz6:H, 2c4f:H, 8cn9:C, 8cn9:H, 8cn9:M, 8cn9:R, 1cvw:H, 1dan:H, 1dva:H, 1dva:I, 2ec9:H, 3ela:H, 2f9b:H, 1fak:H, 2fir:H, 2flb:H, 2flr:H, 5i46:H, 4ibl:H, 4ish:H, 4isi:H, 1j9c:H, 1jbu:H, 4jyu:H, 4jyv:H, 4jzd:H, 4jze:H, 4jzf:H, 1kli:H, 1klj:H, 5l2y:H, 5l2z:H, 5l30:H, 4na9:H, 4ng9:H, 4nga:H, 1o5d:H, 5pa8:C, 5pa9:C, 5paa:C, 5pab:H, 5pac:B, 5pae:B, 5paf:B, 5pag:B, 5pai:B, 5paj:B, 5pak:C, 5pam:B, 5pan:B, 5pao:C, 5paq:B, 5par:C, 5pas:C, 5pat:B, 5pau:C, 5pav:C, 5paw:B, 5pax:C, 5pay:C, 5pb0:B, 5pb1:D, 5pb2:C, 5pb3:C, 5pb4:C, 5pb5:B, 5pb6:C, 2puq:H, 1qfk:H, 6r2w:H, 3th2:H, 3th3:H, 3th4:H, 5tqe:H, 5tqf:H, 5tqg:H, 5u6j:H, 1w0y:H, 1w2k:H, 1w7x:H, 1w8b:H, 1wqv:H, 1wss:H, 1wtg:H, 1wun:H, 1wv7:H, 4x8s:H, 4x8t:H, 4x8u:H, 4x8v:H, 1ygc:H, 4ylq:H, 4yt6:H, 4yt7:H, 1z6j:H, 4z6a:H, 4zma:H, 2zp0:H, 2zwl:H, 4zxx:H, 4zxy:H, 2zzu:H
5 6y3z:P 348 153 0.2074 0.1121 0.2549 5.1
6 8hkx:AS7P 193 27 0.0532 0.0518 0.3704 5.1 8hky:AS7P, 8hkz:AS7P, 8hl1:AS7P, 8hl2:AS7P, 8hl3:AS7P, 8hl4:AS7P, 8hl5:AS7P, 8wkp:AS7P, 8wq2:AS7P, 8wq4:AS7P
7 6v6s:k 370 63 0.1064 0.0541 0.3175 6.0 6v5v:g, 6v6s:a, 6v6s:b, 6v6s:c, 6v6s:d, 6v6s:e, 6v6s:f, 6v6s:g, 6v6s:h, 6v6s:i, 6v6s:j, 6v6s:l, 6v6s:m, 6v6s:t
8 4urs:A 162 28 0.0585 0.0679 0.3929 8.8 4urg:A, 4urs:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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