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BioLiP
>protein
MGNKQAKAPESKDSPRASLIPDATHLGPQFCKSCWFENKGLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPSAA
PTAPPTGAADSIRPPPYSP

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2m1s:A 99 99 1.0000 1.0000 1.0000 2.38e-69 7ckl:B, 7ela:B, 5i72:A, 5i72:B
2 7x6v:B 48 48 0.3232 0.6667 0.6667 3.88e-17
3 7ckm:B 49 47 0.2424 0.4898 0.5106 3.08e-10 7el9:B, 7el9:E, 7elb:B, 7elb:D, 7elc:B, 7vgq:B, 7vh1:B
4 2ff0:A 102 74 0.2020 0.1961 0.2703 0.22 2a66:A, 5l0m:A, 8pki:K
5 7oik:A 4426 36 0.1313 0.0029 0.3611 0.29 7oim:A, 6tax:A, 6tay:A
6 6wi7:A 206 53 0.1717 0.0825 0.3208 0.30 2ckl:A, 8grm:M, 2h0d:A, 7nd1:H, 8pp7:K, 8pp7:M, 4r8p:K, 4r8p:M, 3rpg:B, 6wi8:A, 6wi8:B
7 6f98:A 78 25 0.1111 0.1410 0.4400 1.2
8 7r70:A 150 29 0.1111 0.0733 0.3793 2.0 5d0i:A, 5d0i:B, 5d0k:C, 5d0k:F, 5d0k:I, 5d0k:L, 7r70:B, 7r71:A
9 6zu5:SDD 59 28 0.1010 0.1695 0.3571 2.1
10 2djb:A 72 54 0.1515 0.2083 0.2778 3.4
11 2csy:A 81 43 0.1313 0.1605 0.3023 3.4
12 9biw:B 528 17 0.1010 0.0189 0.5882 4.5 9biw:A
13 2l0b:A 91 76 0.2222 0.2418 0.2895 6.5
14 1cyg:A 680 34 0.1111 0.0162 0.3235 7.2
15 7dvq:M 191 55 0.1414 0.0733 0.2545 7.3 8i0r:K, 8i0s:K, 8i0t:K, 5z56:M, 5z58:M

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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