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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MGLKPCDYPDIKHGGLYHENMRRPYFPVAVGKYYSYYCDEHFETPSGSYWDHIHCTQDGWSPAVPCLRKCYFPYLENGYN
QNHGRKFVQGKSIDVACHPGYALPKAQTTVTCMENGWSPTPRCIRVKTCSKSSIDIENGFISESQYTYALKEKAKYQCKL
GYVTADGETSGSITCGKDGWSAQPTCI

The query sequence (length=187) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2uwn:A 187 187 1.0000 1.0000 1.0000 3.98e-142 2v8e:A, 7zjm:B
2 4ont:D 126 103 0.1283 0.1905 0.2330 0.11 4ont:F, 4ont:E, 4zh1:D, 4zh1:E, 4zh1:F
3 4ont:D 126 53 0.0963 0.1429 0.3396 6.6 4ont:F, 4ont:E, 4zh1:D, 4zh1:E, 4zh1:F
4 5hyp:A 125 86 0.1176 0.1760 0.2558 0.64 5hyt:B, 5hyt:D, 5hyt:F, 5hyt:H
5 7nyc:C 809 31 0.0642 0.0148 0.3871 1.3 7nyd:C
6 1o5i:B 234 102 0.1230 0.0983 0.2255 1.4
7 7t5a:A 230 64 0.1070 0.0870 0.3125 1.5 7t50:A, 7t50:B, 7t51:A, 7t51:B, 7t5a:B
8 4uop:B 409 54 0.0909 0.0416 0.3148 1.7 4uop:A
9 4a5w:B 871 116 0.1551 0.0333 0.2500 1.9
10 3t5o:A 871 116 0.1551 0.0333 0.2500 2.0
11 4e0s:B 898 116 0.1551 0.0323 0.2500 2.2 7nyc:B, 7nyd:B
12 6q55:A 461 63 0.0963 0.0390 0.2857 2.6 6q5a:A
13 8bbt:A 230 45 0.0749 0.0609 0.3111 3.2 8bc5:A, 8bck:A
14 5jlb:A 248 39 0.0749 0.0565 0.3590 5.8 7ea8:L, 4fmu:A, 4h12:A, 6j9j:A, 5jjy:A, 5jle:A, 5lss:A, 5lsx:A, 5lsy:A, 5lsz:A, 5lt6:A, 5lt6:B, 5lt7:A, 5lt8:A, 7lzb:A, 7lzd:A, 7lzf:A, 8q5p:A, 7ty2:A, 7ty3:A, 5v21:A, 5v22:A, 6vdb:A
15 7ufg:B 1182 50 0.0856 0.0135 0.3200 6.1 8d8o:B
16 6crd:B 438 56 0.0856 0.0365 0.2857 10.0 1a14:N, 2b8h:D, 2b8h:A, 2b8h:B, 2b8h:C, 1bji:A, 2c4a:A, 2c4l:A, 6crd:E, 6crd:D, 6crd:G, 6crd:H, 6crd:C, 6crd:F, 6crd:A, 6d3b:A, 4dgr:A, 1f8b:A, 1f8c:A, 1f8d:A, 1f8e:A, 6hcx:A, 6heb:A, 6hfc:A, 6hg0:A, 1iny:A, 5jr5:D, 5jr5:B, 5jyy:A, 5l14:A, 5l15:A, 5l17:A, 5l18:A, 1l7f:A, 1l7g:A, 1l7h:A, 6lxj:B, 6lxj:C, 6lxj:D, 6lxj:A, 6mcx:A, 1mwe:A, 4mwj:A, 4mwl:A, 4mwq:A, 4mwr:A, 4mwu:A, 4mwv:A, 4mww:A, 4mwx:A, 4mwy:A, 4mx0:A, 1nca:N, 1ncb:N, 1ncc:N, 1ncd:N, 1nma:N, 1nmb:N, 1nmc:N, 1nmc:A, 1nna:A, 1nnb:A, 1nnc:A, 3nn9:A, 4nn9:A, 5nn9:A, 6nn9:A, 7nn9:A, 6pzd:A, 6pze:A, 6pzf:B, 6pzf:A, 6pzw:D, 6pzw:C, 6pzw:B, 6pzw:A, 6pzy:B, 6pzy:E, 6pzy:F, 6pzy:A, 6q1z:A, 6q1z:B, 2qwa:A, 2qwb:A, 2qwc:A, 2qwd:A, 2qwe:A, 2qwf:A, 2qwg:A, 2qwh:A, 2qwi:A, 2qwj:A, 2qwk:A, 7r6h:C, 7r6h:D, 6u02:J, 6u02:A, 6u02:B, 6u02:E, 5vh0:A, 5vh0:B, 5vh0:C, 5vh0:D, 3w09:A, 5w26:A, 5w2u:A, 5w2w:A, 5w2y:A, 4weg:A, 1xoe:A, 1xog:A, 1ybk:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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