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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MGISWLDIYHVVSATVPLYVSMTLGFLSARHLKLFSPEQCAGINKFVAKFSIPLLSFQIISENNPFKMSPKLILSDILQK
FLVVVVLAMVLRFWHPTGGRGGKLGWVITGLSISVLPNTLILGMPILSAIYGDEAASILEQIVVLQSLIWYTILLFLFEL
NAARAGTMKILLKAWRKLIINPNTYATLIGIIWATLHFRLGWNLPEMIDKSIHLLSDGGLGMAMFSLGLFMASQSSIIAC
GTKMAIITMLLKFVLGPALMIASAYCIRLKSTLFKVAILQAALPQGVVPFVFAKEYNLHPEIISTGVIFGMLIALPTTLA
YYFLLDL

The query sequence (length=327) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7qp9:A 327 327 1.0000 1.0000 1.0000 0.0 7qp9:B, 7qpa:A, 7qpa:B, 7qpc:A, 7qpc:B
2 8jh5:A 379 379 0.5046 0.4354 0.4354 8.62e-95 8jh5:B, 7y9u:A, 7y9u:B, 7y9v:A, 7y9v:B
3 7wkw:B 377 165 0.3119 0.2706 0.6182 5.67e-59 7wkw:A, 7xxb:A, 7xxb:B
4 7wkw:B 377 166 0.2538 0.2202 0.5000 1.37e-49 7wkw:A, 7xxb:A, 7xxb:B
5 8u5q:A 502 316 0.2171 0.1414 0.2247 8.54e-08 8u5q:C
6 8u5n:A 577 316 0.2171 0.1231 0.2247 1.15e-07 8u5c:E, 8u5c:F, 8u5v:A, 8u5x:A
7 8u56:A 541 309 0.2141 0.1294 0.2265 2.73e-07 8u56:B
8 4kfu:A 205 60 0.0520 0.0829 0.2833 1.0 4kfs:A, 4kft:A, 4kft:B, 4kft:C, 4kft:D, 4kfu:B, 4kfu:C
9 8urb:A 921 52 0.0612 0.0217 0.3846 3.7 8g6r:A
10 7ooc:C 203 36 0.0428 0.0690 0.3889 6.0 7p6z:C, 7pah:C, 7pai:C, 7paj:C, 7pak:C, 7pal:C, 7pam:C, 7pan:C, 7pao:C, 7paq:C, 7par:C, 7pas:C, 7ph9:C, 7pha:C, 7phb:C, 7phc:C, 7pi8:C, 7pi9:C, 7pia:C, 7pib:C, 7pic:C, 7pio:C, 7pip:C, 7piq:C, 7pir:C, 7pis:C, 7pit:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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