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BioLiP
>protein
MGHSSSDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2vp7:A 66 66 0.9848 0.9848 0.9848 6.31e-45 2dx8:A, 2dx8:B, 2vpb:A, 2vpd:A, 2vpd:C, 2vpe:C, 2vpe:A, 2vpg:A, 2vpg:C, 2yyr:A, 2yyr:B
2 2xb1:C 97 57 0.7273 0.4948 0.8421 1.34e-32 4up0:A, 4up5:A, 2xb1:A
3 3zpv:1 62 58 0.4242 0.4516 0.4828 6.53e-19 3zpv:3, 3zpv:5, 3zpv:7, 3zpv:9, 3zpv:A, 3zpv:C, 3zpv:E, 3zpv:G, 3zpv:I, 3zpv:K, 3zpv:M, 3zpv:O, 3zpv:Q, 3zpv:S, 3zpv:U, 3zpv:W, 3zpv:Y
4 2ma5:A 61 34 0.1818 0.1967 0.3529 0.001
5 5c11:A 52 30 0.1515 0.1923 0.3333 0.010 3gl6:A, 2kgg:A, 2kgi:A
6 3n9m:A 503 30 0.1818 0.0239 0.4000 0.069 3n9l:A, 3n9m:C, 3n9n:A, 3n9o:A, 3n9p:A, 3n9q:A, 3puq:A, 3puq:C, 3pur:A, 3pur:C
7 3nzg:D 380 42 0.2424 0.0421 0.3810 0.19 3nzg:A, 3nzg:B, 3nzg:C
8 5tab:A 53 31 0.1667 0.2075 0.3548 0.33
9 6m5r:B 689 50 0.2576 0.0247 0.3400 0.35 6m5s:B, 6m5u:B, 6m5v:B
10 1wem:A 76 39 0.1970 0.1711 0.3333 0.40 4l7x:A, 2m3h:A
11 5wlf:A 60 45 0.1970 0.2167 0.2889 0.48 5wle:A
12 5yc3:A 60 33 0.1970 0.2167 0.3939 0.80 5yc4:A
13 5y20:A 52 53 0.2273 0.2885 0.2830 1.00
14 5z8l:A 204 30 0.1818 0.0588 0.4000 1.0 5z8n:A, 5z8n:B, 5z8n:C
15 1wep:A 79 38 0.2273 0.1899 0.3947 1.2
16 4y96:A 250 50 0.1818 0.0480 0.2400 1.5 4y96:B
17 3kv4:A 432 40 0.2424 0.0370 0.4000 1.7 4do0:A, 3k3n:A, 3k3o:A, 2wwu:A
18 8f8y:B 433 38 0.2273 0.0346 0.3947 1.7 8f8y:A, 8f8z:A, 8f8z:B, 3kqi:A, 7m10:A, 3pu3:A, 3pu3:B, 3pu8:B, 3pu8:A, 3pua:A, 3pus:A, 3pus:B
19 5tbn:A 57 31 0.1667 0.1930 0.3548 2.3
20 1lbg:A 357 20 0.1667 0.0308 0.5500 2.5 2bjc:A, 2bjc:B, 1cjg:A, 1cjg:B, 1efa:A, 1efa:B, 1efa:C, 1jwl:B, 1jwl:A, 1jwl:C, 2kei:A, 2kei:B, 2kej:A, 2kej:B, 2kek:A, 2kek:B, 1l1m:A, 1l1m:B, 1lbg:D, 1lbh:A, 1lbh:B, 1lbh:C, 1lbh:D, 1lcc:A, 1lcd:A, 1osl:A, 1osl:B, 2p9h:A, 2p9h:B, 2paf:A, 2paf:B, 2pe5:A, 2pe5:B, 2pe5:C, 4rzt:A, 4rzt:B, 4rzt:C, 4rzt:D, 1tlf:A, 1tlf:B, 1tlf:C, 1tlf:D
21 6tp5:A 370 32 0.1667 0.0297 0.3438 2.7 6tp5:B
22 8w7y:A 474 17 0.1364 0.0190 0.5294 2.7
23 7ok0:P 47 44 0.1970 0.2766 0.2955 3.0 7oq4:P, 7oqy:P
24 3kv6:D 448 32 0.1515 0.0223 0.3125 3.2 3kv5:D, 3kv5:A, 3kv6:A, 3kv9:A, 3kva:A, 3u78:A
25 5y58:A 548 26 0.1818 0.0219 0.4615 4.0 5y58:E, 5y58:C
26 1x4i:A 70 46 0.2273 0.2143 0.3261 5.1 7zmx:A, 7zmx:B
27 2f6j:A 168 38 0.1667 0.0655 0.2895 6.2 8ag2:A, 6aze:A, 7dmy:A, 7dn4:A, 7dn4:B, 7dn4:C, 7dn4:D, 7dn4:E, 7dn4:F, 7f5c:A, 7f5d:A, 7f5e:A, 2f6j:B, 2f6j:C, 2f6n:A, 2f6n:B, 8f6g:A, 2fsa:A, 2fsa:B, 2fsa:C, 2fuu:A, 5h6y:A, 7k6r:A, 7k6s:A, 7kdw:A, 7kdw:B, 7kdz:A, 7lp0:A, 7lp0:B, 7lpk:A, 7lpk:B, 7lrk:A, 7lrk:B, 7lro:A, 7lro:B, 6lu5:A, 6lu6:A, 7m2e:A, 8ou2:A, 8ou2:B, 3qzs:A, 3qzs:B, 3qzt:A, 3qzv:A, 5r4g:A, 5r4h:A, 5r4i:A, 5r4j:A, 5r4k:A, 5r4l:A, 5r4m:A, 5r4n:A, 2ri7:A, 7rwn:A, 7rwo:A, 7rwp:A, 7rwq:A, 7vd4:A
28 1we9:A 64 33 0.1818 0.1875 0.3636 7.1
29 4gnd:C 107 33 0.1364 0.0841 0.2727 7.4 4gnd:A, 4gne:A, 4gnf:A, 4gng:A, 4gng:D
30 6l8n:A 810 40 0.1970 0.0160 0.3250 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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