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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MGFELPEIFVNAPFTWGPPPSEIEMDGMKVRLYQKTDAIAPSDWLEAMLDQANETKQFTTVKDENRLKALRNLHAKERRH
GPERRFVKHYQNARSHFANKAKRNLTLLPDTVKVPTDVLIFAEFTQAELAKMQNLQDAPTVTDISLHNRPLVYNNAMEKA
SCKTPIRLEETNKSEEFFARSTTVEDGTLRDILKKEAAGTHPIVVTTDEVLALMMTCSRGLHPWHLEIFRYNRMVFISKT
EKSNVEVQWVGETADTLRRPVENDPNESERITNLAKESTKAFNAFVAQACLKTRYQMKCEKNPFPDTQPRLYRYRRFVMH
AETDDHYDIIVRCEIDAVQNDKYVRIFGLLEQCADGVESEWRKTLDSQGAKWISDEYRRNAQKMSRWVCLCHLSGTLMKI
GFLSRSYRSNGTLDPNKHEVLATHTKDPGPLAAQLGIKVGNMWAIADAIIMAFLKQQDLSEALLVKKSGGQSIMLIEKME
DEE

The query sequence (length=483) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ase:A 483 483 1.0000 1.0000 1.0000 0.0
2 8ppl:Ix 455 489 0.2567 0.2725 0.2536 6.90e-34 9bln:x, 8pj1:x, 8pj2:x, 8pj3:x, 8pj4:x, 8pj5:x, 8pj6:x, 7qp6:x, 8rg0:x, 8xxn:3N, 6zon:D
3 8ffu:A 360 73 0.0352 0.0472 0.2329 2.0 8fft:A, 8fft:B, 8fft:C, 8fft:D, 8ffu:B, 8ffu:C, 8ffu:D
4 3klb:A 162 78 0.0538 0.1605 0.3333 3.0
5 7o9q:B 308 73 0.0373 0.0584 0.2466 6.9 7o9q:A
6 7nyw:A 685 95 0.0497 0.0350 0.2526 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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