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BioLiP
>protein
MGFEDMFAKKEGQWDCSSCLVRNEANATRCVACQNPDK

The query sequence (length=38) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7mns:B 38 38 1.0000 1.0000 1.0000 1.00e-23
2 7mnt:B 38 38 0.8158 0.8158 0.8158 2.45e-19 7mnt:D, 7mnu:B
3 7mnr:B 40 38 0.6316 0.6000 0.6316 2.52e-14
4 7mnp:B 39 33 0.5526 0.5385 0.6364 4.92e-11 7mnp:D, 7mnq:B
5 7mo2:B 38 35 0.4737 0.4737 0.5143 4.09e-09 3ch5:B, 7mo2:D
6 7mo5:B 36 31 0.4474 0.4722 0.5484 7.89e-09
7 7mnv:B 38 32 0.5263 0.5263 0.6250 9.85e-09
8 2ebq:A 47 25 0.3684 0.2979 0.5600 2.57e-06 2gqe:A, 2k0c:A
9 7mo3:B 38 34 0.3947 0.3947 0.4412 7.02e-06 7mo3:D, 7mo4:B, 7mo4:D
10 2ebv:A 57 35 0.3947 0.2632 0.4286 1.27e-05
11 2ebr:A 47 22 0.3158 0.2553 0.5455 1.13e-04
12 2d9g:A 53 23 0.3421 0.2453 0.5652 8.58e-04
13 7mo1:B 34 21 0.2368 0.2647 0.4286 0.017
14 8pp6:K 36 22 0.3158 0.3333 0.5455 0.018
15 3a9j:C 32 25 0.2368 0.2812 0.3600 0.18 9avt:C, 9avw:C, 7e62:C, 7e62:J, 2wwz:C, 2wx0:C, 2wx0:G, 2wx1:C
16 8adl:A 633 29 0.3421 0.0205 0.4483 0.22 8adl:I
17 4dno:A 297 32 0.2895 0.0370 0.3438 0.76 4dnf:A, 4dnf:B, 4dnf:C, 4dnf:D, 4dno:B, 4dno:C, 4dno:D, 4ehb:A, 4ehb:B, 4ehb:C, 4ehb:D, 4eus:B, 4eus:D, 5hk9:A, 5hk9:B, 5hk9:D, 5hka:A, 5hka:B, 5hka:C, 5hka:D, 5hkb:A, 5hkb:B, 5hkb:C, 5hkb:D, 5jyc:A, 5jyc:B, 5jyc:C, 5jyc:D, 5tnd:C, 5tnd:D, 5tnd:A, 5tnd:B, 5tne:A, 5tne:C, 5tnf:A, 5tnf:B, 5tnf:C, 5tnf:D, 5tng:A, 5tng:B, 5tng:C, 5tng:D, 5tnh:C, 5tnh:D, 5tnh:A, 5tnh:B, 5tni:A, 5tni:B, 5tni:C, 5tni:D, 5tnj:A, 5tnj:B, 5tnj:C, 5tnj:D, 5tnk:A, 5tnk:B, 5tnk:C, 5tnk:D, 5tnl:A, 5tnl:B, 5tnl:C, 5tnl:D, 5tnm:A, 5tnm:B, 5tnm:C, 5tnm:D, 5tnn:A, 5tnn:B, 5tnn:C, 5tnn:D, 5tnp:A, 5tnp:B, 5tnp:C, 5tnp:D, 5tnq:C, 5tnq:D, 5tnq:A, 5tnq:B, 5tnr:C, 5tnr:D, 5tnr:A, 5tnr:B, 5tns:D, 4yx9:A, 4yx9:B, 4yx9:C, 4yx9:D
18 6jk8:B 801 22 0.1842 0.0087 0.3182 2.1
19 6jk8:A 823 26 0.2105 0.0097 0.3077 2.4 1igr:A, 7v3p:B
20 7u5d:G 300 17 0.2368 0.0300 0.5294 2.9 7u5e:G
21 4y4v:A 316 15 0.2105 0.0253 0.5333 3.1 4y4v:B
22 7u5d:B 342 17 0.2368 0.0263 0.5294 3.2 7u5d:C, 7u5d:D, 7u5d:E, 7u5d:F, 7u5e:B, 7u5e:C, 7u5e:D, 7u5e:E, 7u5e:F
23 6hcz:A 65 21 0.2105 0.1231 0.3810 6.2 6hcz:B
24 6u04:A 168 25 0.2895 0.0655 0.4400 6.7 5erc:A
25 7dco:M 176 23 0.1842 0.0398 0.3043 6.8 5gm6:a

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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