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BioLiP
>protein
MGDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNYTGMGNSTNKKDAQSNAARDFVNYLVRINEIKSEEV
PAFGVA

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3vyy:A 86 86 1.0000 1.0000 1.0000 2.70e-61 3vyy:B
2 5ztm:A 168 81 0.5349 0.2738 0.5679 7.81e-32 5ztm:B
3 3adi:A 71 59 0.2209 0.2676 0.3220 0.012
4 8dga:K 182 68 0.1977 0.0934 0.2500 0.017 8dg7:K
5 6sdw:A 177 58 0.2326 0.1130 0.3448 0.023 6htu:A, 6htu:B, 6htu:C, 6sdy:A
6 8dfv:K 253 68 0.1977 0.0672 0.2500 0.026 8dg5:K
7 9asp:C 92 58 0.2093 0.1957 0.3103 0.40
8 6v5b:C 217 68 0.2442 0.0968 0.3088 1.2 6v5b:B, 6v5c:C, 6v5c:B
9 9asp:B 250 70 0.2442 0.0840 0.3000 2.1 9asm:B, 9asn:B, 9asq:B
10 8dh6:a 534 36 0.1512 0.0243 0.3611 2.6 8e7s:K, 8e7s:k, 8ec0:K, 6giq:a, 6hu9:a, 6hu9:m, 6t0b:a, 6t0b:n, 6t15:a, 6ymx:a, 6ymy:a, 7z10:a
11 4okd:A 801 35 0.1628 0.0175 0.4000 4.3 4okd:B
12 4g6z:A 380 24 0.0930 0.0211 0.3333 6.0
13 6tvk:AAA 660 22 0.1163 0.0152 0.4545 6.1
14 3x1l:B 319 33 0.1279 0.0345 0.3333 6.6
15 7aoi:AF 442 38 0.1279 0.0249 0.2895 6.7 6hiv:AF, 6hix:AF, 6yxy:AF
16 5dv7:C 137 31 0.1279 0.0803 0.3548 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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