Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MGDILIVNAKDVDEMLKQVEILRRLGAKQIAVESSDWRILQEALKKGGDILIVNGGGMTITFRGDDLEALLKAAIEMIKQ
ALKFGATITLSLDGNDLNINITGVPEQVRKELAKEAERLAKEFGITVTRTGGGDVDEMLKQVEILRRLGAKQIAVESDDW
RILQE

The query sequence (length=165) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6zv9:B 169 164 0.9879 0.9645 0.9939 3.70e-111 6wxp:A, 6wxp:B, 6wxp:C, 6wxp:D, 6wxp:E, 6zv9:A
2 6zv9:B 169 37 0.2182 0.2130 0.9730 2.57e-16 6wxp:A, 6wxp:B, 6wxp:C, 6wxp:D, 6wxp:E, 6zv9:A
3 6wxp:F 144 164 0.8667 0.9931 0.8720 1.44e-83
4 4ney:B 173 72 0.2970 0.2832 0.6806 5.36e-24 4ney:A, 4nez:A
5 4ney:B 173 78 0.3091 0.2948 0.6538 8.97e-24 4ney:A, 4nez:A
6 2fcc:A 137 55 0.1152 0.1387 0.3455 0.80 2fcc:B, 1vas:A
7 7xdu:B 348 41 0.1030 0.0489 0.4146 1.2 7xdu:A
8 7qt1:C 452 51 0.1091 0.0398 0.3529 1.4 7qsv:A, 7qsv:B, 7qsv:C, 7qsv:D, 7qsv:E, 7qsv:F, 7qsv:G, 7qsv:H, 7qsx:A, 7qsx:F, 7qsx:B, 7qsx:E, 7qsx:C, 7qsx:D, 7qsx:G, 7qsx:H, 7qsy:A, 7qsy:C, 7qsy:E, 7qsy:G, 7qsz:A, 7qsz:B, 7qsz:C, 7qsz:D, 7qt1:A, 7qt1:E, 7qt1:G, 7qvi:A, 7qvi:B, 7qvi:C, 7qvi:D, 7qvi:E, 7qvi:F, 7qvi:G, 7qvi:H, 7qvi:I, 7qvi:J, 7qvi:K, 7qvi:L, 7qvi:M, 7qvi:N, 7qvi:O, 7qvi:P
9 7r39:A 412 33 0.0909 0.0364 0.4545 2.8 7r39:B, 7r39:C, 7r39:D, 7r39:E, 7r39:F, 7r39:G, 7r39:H
10 3r5x:C 284 116 0.2182 0.1268 0.3103 3.7
11 4wut:A 290 51 0.0970 0.0552 0.3137 3.8
12 3ibg:A 300 46 0.1030 0.0567 0.3696 3.8 3ibg:B, 3ibg:C, 3ibg:D, 3ibg:E, 3ibg:F
13 5xsv:A 486 69 0.0909 0.0309 0.2174 4.0 5xsv:C, 5xsv:B, 5xsv:D
14 6n4n:F 191 40 0.1212 0.1047 0.5000 4.0 6n4n:C
15 8uua:G 177 54 0.1030 0.0960 0.3148 4.5 8a57:K, 8a5i:K, 8a63:K, 7nhn:K, 8uu4:G, 8uu5:G, 8uu6:G, 8uu7:G, 8uu8:G, 8uu9:G
16 2yce:E 255 89 0.1515 0.0980 0.2809 6.1 1w8s:A, 1w8s:B, 1w8s:C, 1w8s:D, 1w8s:E, 1w8s:F, 1w8s:G, 1w8s:H, 1w8s:I, 1w8s:J, 2yce:A, 2yce:B, 2yce:C, 2yce:D, 2yce:F, 2yce:G, 2yce:H, 2yce:I, 2yce:J
17 7rcz:A 511 48 0.0909 0.0294 0.3125 6.6 7rcz:B
18 1xzq:A 449 64 0.1152 0.0423 0.2969 7.3 1xzq:B
19 2i9p:B 296 68 0.1212 0.0676 0.2941 7.8 2i9p:A, 2i9p:C, 2i9p:D
20 7qsw:C 467 32 0.0727 0.0257 0.3750 9.7 7qsw:A, 7qsw:E, 7qsw:G

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218