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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MFWTGWGPWERCTAQCGGGIQARRRICENGPDCAGCNVEYQSCNTNPCPELKKTTPWTPWTPVHYEQRFRYTCKARLADP
NLLEVGRQRIEMRYCS

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ckk:B 121 103 1.0000 0.7934 0.9320 7.23e-67 8ckg:A, 8ckg:B, 8ckk:A, 8ckl:A, 8ckl:B
2 7yyk:A 114 53 0.2500 0.2105 0.4528 2.21e-08 1lsl:A
3 7yyk:A 114 64 0.2396 0.2018 0.3594 3.01e-07 1lsl:A
4 6rus:A 234 66 0.2812 0.1154 0.4091 1.21e-07 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
5 6rus:A 234 61 0.2292 0.0940 0.3607 0.56 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
6 6rus:A 234 69 0.2396 0.0983 0.3333 1.5 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
7 6qig:A 581 89 0.2917 0.0482 0.3146 6.63e-07 3ghm:A, 3ghn:A, 3vn4:A
8 5foe:B 435 47 0.1771 0.0391 0.3617 5.20e-05 5foe:A
9 6rus:B 220 113 0.3333 0.1455 0.2832 0.001 7b26:B, 7noz:D, 8q6r:D, 8q6r:F, 6rur:V, 6rur:Y, 6ruv:V, 6ruv:Y, 6rv6:B, 6s08:A, 6s0a:A, 6s0b:A, 6sej:B
10 7r84:A 52 51 0.1875 0.3462 0.3529 0.002 7r84:C, 7r84:D
11 7r84:B 45 47 0.1771 0.3778 0.3617 0.004 7r85:A, 7r86:C
12 7r86:D 40 36 0.1354 0.3250 0.3611 0.005
13 7za1:E 251 47 0.1771 0.0677 0.3617 0.013 7za1:F, 7za1:H, 7za2:E, 7za2:G, 7za3:E, 7za3:G
14 6ool:A 244 49 0.1771 0.0697 0.3469 0.030
15 6trq:C 336 53 0.1875 0.0536 0.3396 0.40 5bv3:A, 5bv3:C, 6trq:A, 6trq:D
16 8b0f:E 513 34 0.1562 0.0292 0.4412 2.5 3ojy:A
17 7nyd:E 484 34 0.1562 0.0310 0.4412 2.5 7nyc:E
18 4hqo:A 257 20 0.0938 0.0350 0.4500 2.6 4hql:A, 4hql:B, 4hqn:A, 4hqn:B
19 7y82:A 1341 9 0.0729 0.0052 0.7778 3.0
20 8d97:A 1600 9 0.0729 0.0044 0.7778 3.2
21 7xss:B 1282 9 0.0729 0.0055 0.7778 3.2 8d9f:B, 8d9h:B, 7x8a:A, 7xso:A, 7xsp:B, 7xt4:B
22 7y84:A 1242 9 0.0729 0.0056 0.7778 3.3 7x7a:A, 7x7r:A, 7xc7:A, 7y83:A, 7y85:A
23 1c7s:A 858 20 0.1042 0.0117 0.5000 3.4 1c7t:A
24 8gna:A 1188 9 0.0729 0.0059 0.7778 3.5
25 8d8n:B 1256 9 0.0729 0.0056 0.7778 3.5 8d9e:B, 8d9i:B, 7y81:A
26 7y8t:A 1298 9 0.0729 0.0054 0.7778 3.5 8d9g:B, 7xsq:A, 7xsr:B, 7y8y:A
27 1ynh:B 440 68 0.2083 0.0455 0.2941 3.6 1ynh:A, 1ynh:C, 1ynh:D, 1yni:A, 1yni:B, 1yni:C, 1yni:D
28 5lzb:z 614 37 0.1354 0.0212 0.3514 4.5 5lzc:z, 5lzd:z, 2pjp:A
29 8upi:A 510 36 0.1458 0.0275 0.3889 7.2
30 2d1c:A 495 31 0.1146 0.0222 0.3548 9.3 2d1c:B
31 7y9x:A 1458 9 0.0833 0.0055 0.8889 9.6 8gs2:A
32 7ynd:A 1567 9 0.0833 0.0051 0.8889 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218