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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MFWTGWGPWERCTAQCGGGIQARRRICENGPDCAGCNVEYQSCNTNPCPELKKTTPWTPWTPVHYEQRFRYTCKARLADP
NLLEVGRQRIEMRYCLEVLFQ

The query sequence (length=101) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ckk:B 121 119 0.9901 0.8264 0.8403 1.37e-66 8ckg:A, 8ckg:B, 8ckk:A, 8ckl:A, 8ckl:B
2 7yyk:A 114 53 0.2376 0.2105 0.4528 2.58e-08 1lsl:A
3 7yyk:A 114 64 0.2277 0.2018 0.3594 2.92e-07 1lsl:A
4 6rus:A 234 66 0.2673 0.1154 0.4091 8.75e-08 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
5 6rus:A 234 61 0.2178 0.0940 0.3607 0.46 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
6 6rus:A 234 69 0.2277 0.0983 0.3333 1.9 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
7 6qig:A 581 89 0.2772 0.0482 0.3146 4.59e-07 3ghm:A, 3ghn:A, 3vn4:A
8 5foe:B 435 47 0.1683 0.0391 0.3617 1.61e-06 5foe:A
9 6rus:B 220 116 0.3168 0.1455 0.2759 3.76e-04 7b26:B, 7noz:D, 8q6r:D, 8q6r:F, 6rur:V, 6rur:Y, 6ruv:V, 6ruv:Y, 6rv6:B, 6s08:A, 6s0a:A, 6s0b:A, 6sej:B
10 7r84:A 52 51 0.1782 0.3462 0.3529 0.002 7r84:C, 7r84:D
11 7r84:B 45 47 0.1683 0.3778 0.3617 0.004 7r85:A, 7r86:C
12 7r86:D 40 36 0.1287 0.3250 0.3611 0.005
13 7za1:E 251 47 0.1683 0.0677 0.3617 0.010 7za1:F, 7za1:H, 7za2:E, 7za2:G, 7za3:E, 7za3:G
14 6ool:A 244 49 0.1683 0.0697 0.3469 0.020
15 6trq:C 336 53 0.1782 0.0536 0.3396 0.45 5bv3:A, 5bv3:C, 6trq:A, 6trq:D
16 4hqo:A 257 20 0.0891 0.0350 0.4500 2.1 4hql:A, 4hql:B, 4hqn:A, 4hqn:B
17 8b0f:E 513 34 0.1485 0.0292 0.4412 2.4 3ojy:A
18 7nyd:E 484 34 0.1485 0.0310 0.4412 2.4 7nyc:E
19 7y82:A 1341 9 0.0693 0.0052 0.7778 3.3
20 8d97:A 1600 9 0.0693 0.0044 0.7778 3.4
21 7xss:B 1282 9 0.0693 0.0055 0.7778 3.4 8d9f:B, 8d9h:B, 7x8a:A, 7xso:A, 7xsp:B, 7xt4:B
22 7y84:A 1242 9 0.0693 0.0056 0.7778 3.6 7x7a:A, 7x7r:A, 7xc7:A, 7y83:A, 7y85:A
23 1c7s:A 858 20 0.0990 0.0117 0.5000 3.7 1c7t:A
24 8d8n:B 1256 9 0.0693 0.0056 0.7778 3.7 8d9e:B, 8d9i:B, 7y81:A
25 7y8t:A 1298 9 0.0693 0.0054 0.7778 3.7 8d9g:B, 7xsq:A, 7xsr:B, 7y8y:A
26 8gna:A 1188 9 0.0693 0.0059 0.7778 3.9
27 1ynh:B 440 68 0.1980 0.0455 0.2941 4.1 1ynh:A, 1ynh:C, 1ynh:D, 1yni:A, 1yni:B, 1yni:C, 1yni:D
28 5lzb:z 614 37 0.1287 0.0212 0.3514 5.1 5lzc:z, 5lzd:z, 2pjp:A
29 8upi:A 510 36 0.1386 0.0275 0.3889 7.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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