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BioLiP
>protein
MFVNQHLCGSQLVEALYLVCGERGFFYTPK

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8pi5:D 53 29 0.9333 0.5283 0.9655 1.09e-15 2a3g:B, 2a3g:D, 7ac4:B, 1ai0:B, 1ai0:F, 1ai0:D, 1ai0:L, 1ai0:H, 1ai0:J, 1aiy:B, 1aiy:F, 1aiy:D, 1aiy:L, 1aiy:J, 1aiy:H, 2aiy:B, 2aiy:F, 2aiy:D, 2aiy:L, 2aiy:J, 2aiy:H, 3aiy:B, 3aiy:F, 3aiy:D, 3aiy:L, 3aiy:J, 3aiy:H, 4aiy:B, 4aiy:F, 4aiy:D, 4aiy:L, 4aiy:J, 4aiy:H, 5aiy:B, 5aiy:F, 5aiy:D, 5aiy:L, 5aiy:J, 5aiy:H, 1aph:B, 1b17:B, 1b18:B, 1b19:B, 1b2a:B, 1b2b:B, 1b2c:B, 1b2d:B, 1b2e:B, 1b2f:B, 1b2g:B, 1b9e:B, 1b9e:D, 1ben:B, 2bn1:B, 2bn3:B, 1bph:B, 5bqq:F, 5bqq:D, 5bqq:J, 5bqq:L, 5bqq:H, 4bs3:B, 5bts:B, 3bxq:B, 3bxq:D, 6ce7:O, 6ce9:L, 6ce9:O, 6ceb:L, 6ceb:O, 5cny:B, 5cny:D, 5co2:B, 5co2:D, 5co6:B, 5co6:D, 5co9:B, 5co9:D, 1cph:B, 4cy7:D, 5d52:B, 5d53:B, 5d54:B, 5d5e:B, 1dph:B, 4e7t:B, 4e7t:D, 4e7u:B, 5e7w:B, 5e7w:D, 2efa:B, 7elj:B, 5en9:B, 5ena:B, 1ev6:F, 4eww:B, 4eww:D, 4ewx:B, 4ewx:D, 4ewz:B, 4ewz:D, 3exx:B, 3exx:D, 4ex0:B, 4ex0:D, 4ex1:B, 4ex1:D, 4exx:B, 4exx:D, 4ey1:B, 4ey1:D, 4ey9:B, 4ey9:D, 4eyd:B, 4eyd:D, 4eyn:B, 4eyn:D, 4eyp:B, 4eyp:D, 4f0n:B, 4f0n:D, 4f0o:B, 4f0o:D, 4f1a:B, 4f1a:D, 4f1b:B, 4f1b:D, 4f1c:B, 4f1c:D, 4f1d:B, 4f1d:D, 4f1f:B, 4f1f:D, 4f1g:B, 4f1g:D, 4f4t:B, 4f4t:D, 4f4v:B, 4f4v:D, 4f51:B, 4f51:D, 4f8f:B, 4f8f:D, 5fb6:B, 4fg3:B, 4fg3:D, 3fhp:B, 3fhp:D, 4fka:B, 4fka:D, 3fq9:B, 3fq9:D, 1fu2:B, 1fu2:D, 1fu2:F, 1fu2:H, 1fub:B, 1fub:D, 2g4m:B, 1g7a:B, 1g7a:F, 1g7b:B, 1g7b:F, 4gbc:D, 4gbi:D, 4gbk:D, 4gbl:D, 4gbn:D, 3gky:B, 3gky:D, 6gnq:B, 6gnq:D, 8gsg:B, 8gsg:D, 1guj:B, 1guj:D, 6h3m:D, 6h3m:P, 6h3m:L, 1hiq:B, 1hit:B, 2hiu:B, 1hls:B, 5hpr:B, 5hrq:B, 5hrq:D, 5hrq:H, 8hsk:B, 3i3z:B, 3i40:B, 4i5y:B, 4i5z:B, 4idw:B, 4idw:D, 4ihn:B, 3ilg:B, 3ilg:D, 3inc:B, 3inc:D, 3ins:B, 3ins:D, 4ins:B, 4ins:D, 7ins:B, 7ins:D, 7ins:F, 9ins:B, 3ir0:B, 3ir0:D, 3ir0:F, 3ir0:H, 3ir0:J, 3ir0:L, 3ir0:N, 3ir0:P, 3ir0:S, 3ir0:U, 3ir0:W, 3ir0:Y, 1iza:B, 1iza:D, 1izb:B, 1izb:D, 1j73:B, 1j73:D, 1jca:B, 3jsd:B, 3jsd:D, 2jv1:B, 6k59:B, 7kd6:B, 7kd6:T, 6kh8:B, 6kh9:B, 6kha:B, 3kq6:B, 3kq6:D, 2kxk:B, 2lgb:B, 5lis:B, 2m2m:B, 2m2n:B, 2m2o:B, 2m2p:B, 4m4f:D, 4m4h:D, 4m4i:D, 4m4j:D, 4m4l:B, 4m4l:D, 4m4m:B, 4m4m:D, 1m5a:B, 1m5a:D, 5mam:P, 7md5:T, 7md5:P, 7md5:R, 7md5:V, 1mhi:B, 5mhd:B, 5miz:B, 1mpj:D, 1mso:B, 1mso:D, 3mth:D, 2mvc:B, 2mvd:B, 5mwq:B, 2om1:J, 2om1:R, 2om1:T, 2omi:B, 3p2x:B, 3p2x:D, 3p33:B, 3p33:D, 3p33:F, 3p33:H, 6p4z:B, 1q4v:B, 1q4v:D, 3q6e:D, 6q8q:B, 7qac:B, 1qiy:B, 1qiy:F, 1qiy:D, 1qiy:L, 1qiy:J, 1qiy:H, 1qiz:B, 1qiz:F, 1qiz:D, 1qiz:L, 1qiz:J, 1qiz:H, 2qiu:B, 2qiu:D, 7qid:F, 7qid:L, 7qid:J, 1qj0:D, 6qq7:B, 6qqg:B, 6qrh:B, 6qrk:B, 2r35:D, 2r36:B, 2r36:D, 2rn5:B, 3rto:B, 3rto:D, 1rwe:B, 1rwe:D, 4rxw:B, 4rxw:D, 6s34:B, 7s4y:B, 7s4y:D, 1sf1:B, 6sof:H, 6sof:F, 6sof:L, 6sof:J, 3t2a:B, 2tci:D, 6tc2:J, 1trz:B, 1trz:D, 3tt8:B, 3tt8:D, 1tyl:B, 4une:B, 5uqa:B, 3v19:B, 3v19:D, 3v1g:B, 3v1g:D, 7v3p:F, 3w7y:B, 3w7y:D, 3w7z:B, 3w7z:D, 3w80:B, 3w80:D, 3w80:F, 3w80:H, 1wav:B, 1wav:F, 1wav:D, 1wav:J, 1wav:H, 1wav:L, 4xc4:B, 4xc4:D, 1xgl:B, 1xw7:B, 1xw7:D, 7z5q:B, 1zeg:B, 1zeg:D, 1zeh:B, 1zeh:D, 1zei:A, 1zei:B, 1zei:C, 1zei:D, 1zei:E, 1zei:F, 1zni:B, 1zni:D, 1znj:B, 1znj:L, 1znj:J, 2zp6:B, 2zp6:D, 2zpp:B
2 8z4b:B 30 29 0.8667 0.8667 0.8966 2.63e-14 8z4b:D
3 2n2v:B 30 29 0.8667 0.8667 0.8966 4.55e-14 2n2w:B
4 1jco:B 30 29 0.8667 0.8667 0.8966 1.20e-13
5 2mpg:B 30 27 0.8333 0.8333 0.9259 3.08e-13
6 2n2x:B 30 29 0.8333 0.8333 0.8621 4.78e-13
7 2h67:B 30 27 0.8333 0.8333 0.9259 9.14e-13 2hh4:B, 2hho:B, 4iuz:B, 2jmn:B, 2jum:B, 2juu:B, 2juv:B, 1k3m:B, 2k91:B, 2k9r:B, 2kjj:B, 2kju:B, 1kmf:B, 2kqq:B, 2l1z:B, 1lkq:B, 1lph:B, 1lph:D, 2m1d:B, 2m1e:B, 2mli:B, 2mpi:B, 1t1k:B, 1t1p:B, 1t1q:B, 1vkt:B, 6x4x:B
8 2l1y:B 30 27 0.8000 0.8000 0.8889 1.10e-12 4nib:B, 3rov:B, 3rov:F, 3rov:D, 3rov:L, 3rov:J, 3rov:H
9 7kd6:H 47 25 0.8000 0.5106 0.9600 7.40e-12 7kd6:N
10 1pmx:A 70 24 0.4333 0.1857 0.5417 4.29e-05 1gzr:B, 1gzy:B, 1gzz:B, 1h02:B, 1imx:A
11 4xss:B 47 24 0.4333 0.2766 0.5417 4.82e-05
12 6kd5:B 238 27 0.3000 0.0378 0.3333 0.71
13 2f5x:B 300 11 0.3000 0.0300 0.8182 1.5 2f5x:A, 2f5x:C
14 7shl:A 645 30 0.4000 0.0186 0.4000 1.9
15 2h8b:B 31 19 0.3000 0.2903 0.4737 2.6 2k6t:B
16 8jgg:R 223 21 0.3333 0.0448 0.4762 3.5
17 7vv6:R 271 25 0.3333 0.0369 0.4000 4.3 7s8l:R, 7s8m:R, 7s8n:R, 7s8o:R, 7vdh:R, 7vdl:R, 7vdm:R, 7vuy:R, 7vuz:R, 7vv0:R, 7vv3:R, 7vv4:R, 7vv5:R
18 7xpk:A 159 20 0.2333 0.0440 0.3500 7.1 7xpk:C
19 8hj5:F 252 17 0.3000 0.0357 0.5294 7.7 8dwc:R, 8dwg:R, 8dwh:R, 8jgf:R
20 2jih:B 286 16 0.2667 0.0280 0.5000 9.7 2jih:A, 3q2g:A, 3q2g:B, 3q2h:A, 3q2h:B, 2v4b:A, 2v4b:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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