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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MFTGIITDIGKVDRVKPLNEGVLLRIETAYDPETIELGASIACSGVCLTVVALPEKGSNARWFEVEAWEEALRLTTISSW
QSGRKINLERSLKLGDEMGGHLVFGHVDGQAEIVERKDEGDAVRFTLRAPEELAPFIAQKGSVALDGTSLTVNGVNANEF
DVLLIRHSLEVTTWGERKAGDKVNIEIDQLARYAARLAQYQKLEH

The query sequence (length=205) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4gqn:B 205 205 1.0000 1.0000 1.0000 2.16e-151 4e0f:A, 4e0f:B, 4g6i:A, 4g6i:B, 4g6i:C, 4gqn:A, 4gqn:C
2 1kzl:A 202 201 0.3659 0.3713 0.3731 1.98e-41
3 3a35:A 184 190 0.2244 0.2500 0.2421 6.33e-10 3a35:B, 3a3b:B, 3a3b:A, 3a3g:A, 3a3g:B
4 3a35:A 184 86 0.1317 0.1467 0.3140 0.29 3a35:B, 3a3b:B, 3a3b:A, 3a3g:A, 3a3g:B
5 1hze:A 97 105 0.1659 0.3505 0.3238 1.30e-09 1hze:B, 1i18:A, 1i18:B, 1pkv:A, 1pkv:B
6 1hze:A 97 96 0.1268 0.2680 0.2708 2.25e-06 1hze:B, 1i18:A, 1i18:B, 1pkv:A, 1pkv:B
7 3ddy:A 175 128 0.1610 0.1886 0.2578 0.032
8 5keu:B 280 23 0.0585 0.0429 0.5217 0.35 5keu:A
9 2e67:A 263 32 0.0634 0.0494 0.4062 1.7 2e67:B, 2e67:C, 2e67:D, 2e67:E, 2e67:F
10 8a8o:D 102 48 0.0683 0.1373 0.2917 4.5 8a8o:C
11 3ug4:C 484 83 0.1220 0.0517 0.3012 4.7 3ug4:A, 3ug4:B, 3ug4:D, 3ug4:E, 3ug4:F, 3ug5:A, 3ug5:B, 3ug5:C, 3ug5:D, 3ug5:E, 3ug5:F
12 1fl6:H 219 59 0.0927 0.0868 0.3220 5.4 1fl6:B
13 1rlm:A 269 24 0.0537 0.0409 0.4583 7.2 1rlm:B, 1rlm:C, 1rlm:D, 1rlo:A, 1rlo:B, 1rlo:C, 1rlo:D, 1rlt:A, 1rlt:B, 1rlt:C, 1rlt:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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