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BioLiP
>protein
MFQDPQERPRKLPQLCTELQTTIHDIILECVYCKQQLLRREVYDFAFRDLCIVYRDGNPYAVCDKCLKFY

The query sequence (length=70) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4xr8:H 151 70 1.0000 0.4636 1.0000 1.86e-47 2ljx:A, 2ljy:A, 2ljy:B, 2ljz:A
2 7uaj:B 512 63 0.9000 0.1230 1.0000 7.52e-44 2fk4:A, 8gcr:A, 4giz:C, 4giz:D, 8jrn:D, 8jrn:B, 8jro:D, 8jro:B, 8jrp:B, 8jrp:D, 8jrq:B, 8jrq:D, 8jrr:B, 8jrr:D, 8r1f:B, 8r1g:B, 8r1g:E, 6siv:B, 6sja:B, 7uaj:A, 7uaj:C, 7uaj:D, 4xr8:F
3 6sjv:A 529 69 0.5571 0.0737 0.5652 3.09e-24 6sqc:A
4 6slm:A 539 70 0.5714 0.0742 0.5714 3.67e-24
5 6smv:A 525 59 0.2429 0.0324 0.2881 1.24e-06
6 3py7:A 500 41 0.1714 0.0240 0.2927 0.004
7 4hg6:A 747 17 0.1571 0.0147 0.6471 1.7 5eiy:A, 5ej1:A, 5ejz:A, 4p00:A, 4p02:A
8 4rh7:A 3005 36 0.1286 0.0030 0.2500 3.8
9 6sc2:B 3930 36 0.1286 0.0023 0.2500 4.3 6rla:A, 6rla:B, 6sc2:A
10 8bwy:C 4264 23 0.1286 0.0021 0.3913 4.9
11 6zyw:C 4433 23 0.1286 0.0020 0.3913 5.1
12 8bx8:A 4453 23 0.1286 0.0020 0.3913 5.1 7k58:A, 7k5b:A, 7kek:A
13 7moq:C 4159 23 0.1286 0.0022 0.3913 5.1 6zyy:C
14 1onk:B 263 30 0.1714 0.0456 0.4000 5.7 3d7w:B, 1oql:B, 1pum:B, 1puu:B, 2r9k:B, 2rg9:B, 1sz6:B, 1tfm:B, 1yf8:B
15 8d3p:E 100 58 0.2286 0.1600 0.2759 6.9 8d3l:F, 8d3l:E, 8d3m:F, 8d3m:E, 8d3p:F, 8d3q:F, 8d3q:E
16 6sr6:C 524 20 0.1286 0.0172 0.4500 7.3 4gni:A, 4gni:B, 5mb9:B, 5mb9:A, 6sr6:A, 7z3n:D, 7z3o:D
17 7eo9:A 351 55 0.2286 0.0456 0.2909 8.6 7eob:A, 2hxf:C, 1i6i:A, 1ia0:K, 1vfv:A, 1vfw:A, 1vfx:A, 2zfi:A, 2zfj:A, 2zfk:A, 2zfl:A, 2zfm:A
18 8uto:N 389 55 0.2286 0.0411 0.2909 8.7 2hxh:C, 1i5s:A, 8utn:K, 8utn:N, 8uto:K, 8utp:K, 8utp:N, 8utq:K, 8utr:K, 8utt:K, 8utt:N, 8utu:K, 8utv:K, 8uty:K, 8uty:N, 4uxp:C, 1vfz:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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