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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MFMINILMLIIPILLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADAIKLFIKEPLRPATSSASMFILAPIMALG
LALTMWIPLPMPYPLINMNLGVLFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSF
TLSTLITTQEQMWLILPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFAGPFALFFMAEYANIIMMNIFTAILFLGT
SHNPHMPELYTINFTIKSLLLTMSFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHVSLPILTSGIPPQT

The query sequence (length=313) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8q0m:H 318 318 1.0000 0.9843 0.9843 0.0 8q1u:H, 8q25:H, 8q45:H, 8q47:H, 8q48:H, 8q4a:H, 7qsk:H, 7r45:H, 7r46:H, 7r47:H, 7r48:H, 7r4c:H, 7r4g:H, 7zd6:H, 6zka:H, 6zkc:H, 6zkd:H, 6zke:H, 6zkf:H, 6zkh:H, 6zki:H, 6zkj:H, 6zkl:H, 6zkm:H, 6zkn:H
2 5gup:r 318 318 0.8946 0.8805 0.8805 0.0 8uep:1H, 8ueq:1H, 8uer:1H, 8uez:1H, 7v2c:s, 7v2d:s, 7v2e:s, 7v2f:s, 7v2h:s, 7v2k:s, 7v2r:s, 7v30:s, 7v31:s, 7v32:s, 7v33:s, 7v3m:s, 7vbl:s, 7vbp:s, 7vc0:s, 7vwl:s, 7vy1:s, 7vy9:s, 7vye:s, 7vyg:s, 7vyi:s, 7vys:s, 7vz8:s, 7vzv:s, 7vzw:s, 7w00:s, 7w0h:s, 7w0r:s, 7w0y:s, 7w1o:s, 7w1p:s, 7w1t:s, 7w1u:s, 7w1v:s, 7w1z:s, 7w20:s, 7w2k:s, 7w2l:s, 7w2r:s, 7w2u:s, 7w2y:s, 7w31:s, 7w32:s, 7w35:s, 7w4c:s, 7w4d:s, 7w4e:s, 7w4f:s, 7w4g:s, 7w4j:s, 7w4k:s, 7w4l:s, 7w4m:s, 7w4n:s, 7w4q:s
3 7b93:H 318 316 0.7796 0.7673 0.7722 4.01e-178 8ca3:H, 8ca5:H, 8iao:H, 8iap:H, 8ib4:H, 8ib5:H, 8ib9:H, 8iba:H, 8ibd:H, 8ibe:H, 8ic2:H, 8ic3:H, 7psa:H, 8rgp:H, 8rgr:H
4 5xtc:s 318 318 0.7859 0.7736 0.7736 1.20e-158 5xtd:s, 5xth:s, 5xti:s, 5xti:Bs
5 8b9z:H 315 298 0.4569 0.4540 0.4799 9.24e-95 8esz:1
6 7ar7:H 324 298 0.4537 0.4383 0.4765 1.55e-91 7a23:H, 7aqq:H, 7ar8:H, 7arb:H, 8bef:H, 8bpx:H, 8bq5:H, 8bq6:H, 8e73:1M
7 6rfr:1 340 315 0.4249 0.3912 0.4222 5.22e-74 6h8k:1, 6y79:1
8 7z7s:H 322 302 0.3898 0.3789 0.4040 5.08e-66 7p61:H, 7p7c:H, 7p7l:H, 7p7m:H, 7z80:H
9 6q8o:H 353 308 0.4089 0.3626 0.4156 6.39e-65 6q8o:Q
10 8e9g:H 395 306 0.3770 0.2987 0.3856 3.09e-64 8e9h:H, 8e9i:H
11 8qby:H 342 314 0.3962 0.3626 0.3949 2.31e-63
12 6l7o:A 371 304 0.3355 0.2830 0.3454 3.47e-47 6l7p:A
13 7z0s:D 306 207 0.1917 0.1961 0.2899 1.89e-08
14 1gvi:B 588 76 0.0735 0.0391 0.3026 0.034 1gvi:A
15 1j0h:A 588 77 0.0735 0.0391 0.2987 0.11 1j0h:B, 1j0i:A, 1j0i:B, 1j0j:B, 1j0j:A, 1j0k:A, 1j0k:B
16 7d9b:A 588 73 0.0639 0.0340 0.2740 0.30 7d9c:A, 7dcg:A, 7dch:A, 7ehh:A, 7ehi:A
17 3a6o:A 585 55 0.0511 0.0274 0.2909 0.51 3a6o:B, 2d2o:A, 2d2o:B, 1g1y:A, 1g1y:B, 1jf5:A, 1jf5:B, 1jf6:A, 1jf6:B, 1ji2:A, 1ji2:B, 1jib:A, 1jib:B, 1jl8:A, 1jl8:B, 1vb9:A, 1vb9:B, 1vfm:A, 1vfm:B, 1vfo:A, 1vfo:B, 1vfu:A, 1vfu:B, 1wzk:A, 1wzk:B, 1wzl:A, 1wzl:B, 1wzm:A, 1wzm:B
18 7jm6:A 667 71 0.0703 0.0330 0.3099 1.6 7jm6:B
19 7jm7:A 683 71 0.0671 0.0307 0.2958 7.4 7cq5:C, 7cq5:D, 7cq7:C, 7cq7:D, 7jm7:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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