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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MFLTSILLSSLYLFNRILAWQGNVKHFYLFASNLLLLFIVVLYINFNTFSNSFQFNFELFNSLNPFGLSNSDISNGLLFG
IDGLSLTFILLTVLLIPLTLLGNWYNINFNSNLYYTLVLAIGLVILLNFWALDYISFYILFEATLPLLFILIHIYGSSDS
ERASFYVLMFTLSGSLFMLLSIVVISIVLNTTNFINHNLFVLSLDLQTIIWLGLFIAIMVKTPLFPIHVWLPVVHSESPL
AGSMILAGLILKLALYAILRLLLPLLCEAQILYTPMIYIISLLTIILTSLATLRQIDLKVIIAYSSISHMGIAILGVCSN
TSLGIYGSIVLGVAHGFVSPALFLIVGGILYDRYHIRIVNYYKGLTTYMPQLATYIIILSFANIGTPLTGNFTGEFLSLQ
GGFIRNPIIGGISCISVLLAAIYQLKLTNKLTGGISSIYMHRTNDVTIREKFIMNILIISTLIIGICPQIMYNLLYWTVN
NYIYII

The query sequence (length=486) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6rfq:4 486 486 1.0000 1.0000 1.0000 0.0 6rfr:4, 6y79:4
2 7zmb:4 494 447 0.3786 0.3725 0.4116 4.42e-96 7zme:4, 7zmg:4, 7zmh:4
3 8bpx:M 494 457 0.3601 0.3543 0.3829 4.16e-95 7a23:M, 7aqq:M, 7ar7:M, 7ar8:M, 7arb:M, 8bef:M
4 8qby:M 503 408 0.2984 0.2883 0.3554 3.86e-79 8qc1:M
5 3rko:M 504 419 0.2778 0.2679 0.3222 1.29e-54 3rko:C
6 8e9i:M 518 489 0.2819 0.2645 0.2802 2.26e-52 8e9g:M, 8e9h:M
7 5lnk:M 459 371 0.2572 0.2723 0.3369 3.92e-52 8q0a:M, 8q0f:M, 8q0m:M, 8q0o:M, 8q1y:M, 8q25:M, 8q45:M, 8q48:M, 8q49:M, 8q4a:M, 7qso:M, 7r4f:M, 7r4g:M, 6zkm:M, 6zkn:M, 6zku:M, 6zkv:M
8 7v2c:r 459 421 0.2860 0.3028 0.3302 5.08e-52 7v2d:r, 7v2e:r, 7v2f:r, 7v2h:r, 7v2k:r, 7v2r:r, 7v30:r, 7v31:r, 7v32:r, 7v33:r, 7v3m:r, 7vbl:r, 7vbp:r, 7vc0:r, 7vwl:r, 7vxs:r, 7vy1:r, 7vy9:r, 7vye:r, 7vyg:r, 7vyi:r, 7vys:r, 7vz8:r, 7vzv:r, 7vzw:r, 7w00:r, 7w0h:r, 7w0r:r, 7w0y:r, 7w1o:r, 7w1p:r, 7w1t:r, 7w1u:r, 7w1v:r, 7w1z:r, 7w20:r, 7w2k:r, 7w2l:r, 7w2r:r, 7w2u:r, 7w2y:r, 7w31:r, 7w32:r, 7w35:r, 7w4c:r, 7w4d:r, 7w4e:r, 7w4f:r, 7w4g:r, 7w4j:r, 7w4k:r, 7w4l:r, 7w4m:r, 7w4n:r, 7w4q:r
9 6l7o:D 504 476 0.2716 0.2619 0.2773 4.67e-49 6l7p:D
10 8iaq:M 459 326 0.2366 0.2505 0.3528 1.23e-48 8ib6:M, 8ibb:M, 8ibf:M, 8ic4:M
11 5xtc:r 459 365 0.2449 0.2593 0.3260 2.29e-43 5xtd:r, 5xth:r, 5xti:r, 5xti:Br
12 6rfq:5 654 400 0.2222 0.1651 0.2700 5.39e-15 7o6y:5, 6rfr:5
13 5lnk:L 599 332 0.1708 0.1386 0.2500 1.20e-14
14 7v2h:l 606 333 0.1687 0.1353 0.2462 9.77e-14 7vc0:l, 7vy1:l, 7vys:l, 7w0h:l, 7w2l:l, 7w2r:l, 7w2y:l, 7w32:l, 7w4q:l
15 8gym:n5 709 350 0.1831 0.1255 0.2543 1.46e-12 8gym:N5, 7tgh:5
16 6l7o:F 647 276 0.1399 0.1051 0.2464 2.34e-10 6l7p:F
17 8bpx:L 665 352 0.1605 0.1173 0.2216 5.06e-10 8bef:L
18 8qby:N 479 105 0.0617 0.0626 0.2857 2.17e-09
19 7a23:a 600 294 0.1379 0.1117 0.2279 3.73e-09
20 7zme:5 670 185 0.0947 0.0687 0.2486 5.61e-09 7zmg:5
21 8iuf:N4 478 248 0.1584 0.1611 0.3105 1.58e-08 8j9h:N4, 8j9i:N4, 8j9j:N4
22 8qby:L 659 179 0.0967 0.0713 0.2626 3.86e-08 8qc1:L
23 7aqq:N 488 192 0.1111 0.1107 0.2812 4.54e-07 7a23:I, 7a24:I, 7ar7:N, 7ar8:N, 8bef:N, 8bpx:N
24 3rko:L 612 457 0.2037 0.1618 0.2166 1.94e-06 3rko:B
25 5gup:i 347 226 0.1152 0.1614 0.2478 3.31e-05 7v2c:i, 7v2d:i, 7v2e:i, 7v2f:i, 7v2h:i, 7v2k:i, 7v2r:i, 7v30:i, 7v31:i, 7v32:i, 7v33:i, 7v3m:i, 7vbl:i, 7vbp:i, 7vc0:i, 7vwl:i, 7vxs:i, 7vy1:i, 7vy9:i, 7vye:i, 7vyg:i, 7vyi:i, 7vys:i, 7vz8:i, 7vzv:i, 7vzw:i, 7w00:i, 7w0h:i, 7w0r:i, 7w0y:i, 7w1o:i, 7w1p:i, 7w1t:i, 7w1u:i, 7w1v:i, 7w1z:i, 7w20:i, 7w2k:i, 7w2r:i, 7w2u:i, 7w2y:i, 7w31:i, 7w32:i, 7w35:i, 7w4c:i, 7w4d:i, 7w4e:i, 7w4f:i, 7w4g:i, 7w4j:i, 7w4k:i, 7w4l:i, 7w4m:i, 7w4n:i, 7w4q:i
26 8iaq:N 344 167 0.1070 0.1512 0.3114 4.40e-05 8ib6:N, 8ibb:N, 8ibf:N, 8ic4:N
27 7qso:N 347 193 0.1091 0.1527 0.2746 9.13e-05 7r41:N, 7r42:N, 7r44:N, 7r45:N, 7r47:N, 7r48:N, 7r4c:N, 7r4d:N, 7r4f:N, 7r4g:N, 6zkm:N, 6zkn:N, 6zku:N, 6zkv:N
28 6l7o:B 493 176 0.0947 0.0933 0.2614 4.66e-04 6l7p:B
29 6tjv:F 600 245 0.1029 0.0833 0.2041 0.003
30 7o6y:2 469 184 0.1008 0.1045 0.2663 0.013 7o71:2, 6rfq:2, 6rfr:2, 6y79:2, 7zkp:2
31 5xtc:i 347 111 0.0741 0.1037 0.3243 0.020 5xtd:i, 5xth:i, 5xti:i, 5xti:Bi
32 8e9g:L 625 157 0.0802 0.0624 0.2484 0.061 8e9h:L, 8e9i:L
33 7zkq:2 448 181 0.0967 0.1049 0.2597 0.33
34 6eet:A 443 112 0.0514 0.0564 0.2232 0.47 6bxz:C, 6bxz:A, 6c10:A, 5kj4:A, 5kj4:B, 5kj4:C, 5kj4:D
35 4wz7:5 619 66 0.0453 0.0355 0.3333 0.64 6h8k:5
36 7dr0:B 706 69 0.0432 0.0297 0.3043 2.2 7dr1:B, 7dr2:aB, 7dr2:bB, 7dr2:cB, 7dr2:dB
37 7zmb:2 558 283 0.1317 0.1147 0.2261 2.4 7zme:2, 7zmg:2, 7zmh:2
38 5x7o:A 1247 51 0.0432 0.0168 0.4118 6.3 5x7o:B, 5x7p:B, 5x7p:A, 5x7q:A, 5x7q:B, 5x7r:A, 5x7r:B, 5x7s:A, 5x7s:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218