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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MFLRIDRLQIELPMPKEQDPNAAAAVQALLGGRFGEMSTLMNYMYQSFNFRGKKALKPYYDLIANIATEELGHIELVAAT
INSLLAKNPGKDLEEGVDPASTPLGFAKDVRNAAHFIAGGANSLVMGAMGEHWNGEYVFTSGNLILDLLHNFFLEVAART
HKLRVYEMTDNPVAREMIGYLLVRGGVHAAAYGKALESLTGVEMTKMLPIPKIDNSKIPEAKKYMDLGFHRNLYRFSPED
YRDLGLIWKGASPEDGTEVVVVDGPPTGGPVFDAGHDAAEFAPEFHPGELYEIAKKLYE

The query sequence (length=299) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2v8t:A 302 299 1.0000 0.9901 1.0000 0.0 6kk8:A, 6kk8:B, 2v8t:B, 2v8u:A, 2v8u:B
2 1jku:A 266 201 0.2207 0.2481 0.3284 1.63e-25 1jku:F, 1jku:B, 1jku:C, 1jku:D, 1jku:E, 1jkv:A, 1jkv:F, 1jkv:B, 1jkv:C, 1jkv:D, 1jkv:E, 1o9i:A, 1o9i:F, 1o9i:B, 1o9i:C, 1o9i:D, 1o9i:E
3 4r42:C 220 183 0.1572 0.2136 0.2568 2.96e-09 6j42:A, 6j42:B, 6j42:C, 4r42:A, 4r42:B
4 2pbf:A 218 88 0.0903 0.1239 0.3068 0.75 2pbf:B
5 7xzo:C 561 48 0.0569 0.0303 0.3542 1.9 7xzo:A, 7xzo:B, 7xzo:D, 7xzp:A, 7xzp:B
6 2c7j:A 162 52 0.0602 0.1111 0.3462 2.6 2c7k:A, 2c7l:A, 2j96:A, 2j96:B
7 7x14:A 121 20 0.0334 0.0826 0.5000 2.7
8 7fh6:A 653 34 0.0435 0.0199 0.3824 6.4 7fh7:A, 7fh8:A, 7ron:A, 7roo:A
9 7tve:F 270 18 0.0334 0.0370 0.5556 6.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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