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BioLiP
>protein
MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQPRPVL

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8oue:J 64 64 1.0000 1.0000 1.0000 3.47e-44 8ouf:J, 7v9a:J
2 2aus:D 53 39 0.2812 0.3396 0.4615 5.33e-05 2aus:B, 2ey4:E, 2ey4:F, 3hax:C, 3hay:C, 3hjw:B, 2hvy:C, 3lwo:B, 3lwp:B, 3lwq:B, 3lwr:B, 3lwv:B, 2rfk:B
3 2qqo:A 431 21 0.1250 0.0186 0.3810 3.1 5dn2:C, 5dn2:D, 5dn2:A, 5dq0:A, 7m22:N, 2qqo:B, 6tdb:A, 6tdb:B, 6tdb:C, 6tdb:D, 6tjt:A, 6tjt:B
4 5gky:A 3660 30 0.2031 0.0036 0.4333 4.2 5gky:C, 5gky:E, 5gky:G, 5gkz:A, 5gkz:C, 5gkz:E, 5gkz:G, 5gl0:A, 5gl0:C, 5gl0:E, 5gl0:G, 5gl1:A, 5gl1:C, 5gl1:E, 5gl1:G
5 4kh6:B 596 33 0.2031 0.0218 0.3939 4.3 4a59:A, 4a59:B, 4a59:C, 4a59:D, 4a5a:A, 4a5a:B, 4a5a:C, 4a5a:D, 4kh4:A, 4kh4:B, 4kh5:A, 4kh5:B, 4kh6:A
6 7f6w:A 506 28 0.1719 0.0217 0.3929 5.0
7 4pde:A 244 33 0.2031 0.0533 0.3939 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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