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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MFLKFHLAEDYRKTTNLFFISQMGQLEQYQGLIEKLKLKNNVLIVLYTAANQLMPKNIAERCNKELFNSIRFLCLPKSPM
RLNIKNYIMMLNSYKLLLKRIKPKELYISSFERHYSLLGTLAKNMGFKVNLVEEGTGTYKYSSMQEACKKLDDSMNYQEK
KVYKKISKSFIYKNIRSSLKPFDSFDHIYVAFPEKVKNVFKCNKISFFSIYESRLENEHVSEFIRNNKCSKKNIIFCAQR
YPIPEREYISTILDILYKYAKEYKTKVFIKLHPKERIETIDVYKEISKDKQGLIIMENISFPAEDFISQLKPRKVLSIAS
TSLVYTTLISKDIKAISIYPLFRKEVLKKIEYKEEYFKDIESHYSLLSKFDGIRILNNTNEI

The query sequence (length=382) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5wcn:M 382 382 1.0000 1.0000 1.0000 0.0 5wcn:A, 5wd7:A
2 6kuj:B 705 46 0.0393 0.0213 0.3261 1.3 6kuk:B, 6kup:B, 6kur:B, 6kut:B, 6kuu:B, 6kuv:B
3 6hly:A 320 50 0.0445 0.0531 0.3400 2.6 6hlz:A, 6hlz:B, 6hm2:A, 6hm2:B, 6hm2:C, 6hm2:D, 6hm2:E
4 9fvt:A 519 36 0.0340 0.0250 0.3611 3.2 9fvt:B, 9fvt:C, 9fvt:D
5 6c7n:A 553 64 0.0550 0.0380 0.3281 4.6 6c7n:B, 6c7n:C
6 7cny:A 253 138 0.0864 0.1304 0.2391 5.2 7cny:C
7 3mwc:A 388 109 0.0707 0.0696 0.2477 5.7
8 7txl:A 275 147 0.0890 0.1236 0.2313 6.3 7txk:A, 7txk:B, 7txl:B
9 2yjg:A 418 78 0.0524 0.0478 0.2564 6.9 2yjg:B
10 3va7:A 1130 80 0.0654 0.0221 0.3125 6.9
11 2wjy:A 773 81 0.0524 0.0259 0.2469 8.6 2gjk:A, 2gk6:A, 2gk6:B, 2gk7:A, 8rxb:E, 8rxb:A, 8rxb:D, 8rxb:I, 8rxb:L, 8rxb:P, 2wjv:A, 2wjv:B, 2xzo:A
12 8h9d:A 1114 88 0.0654 0.0224 0.2841 9.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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