Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MFLDTTPFRADEPYDVFIAGSGPIGATFAKLCVDANLRVCMVEIGAADSFTSKPMKGQVPIPGYHKKNEIEYQKDIDRFV
NVIKGALSTCSIPTSNNHIATLDPSVVSNSLDKPFISLGKNPAQNPFVNLGAEAVTRGVGGMSTAWTCATPEFFAPADFN
APHRERPKLSTDAAEDARIWKDLYAQAKEIIGTSTTEFDHSIRHNLVLRKYNDIFQKENVIREFSPLPLACHRLTDPDYV
EWHATDRILEELFTDPVKRGRFTLLTNHRCTKLVFKHYRPGEENEVDYALVEDLLPSVKKIYARSYVVACGAVATAQVLA
NSHIPPERDATIPTPLMPMLGKYITEQPMTFCQVVLDSSLMEVVRNPPWPGLDWWKEKVARHVEAFPNDPIPIPFRDPEP
QVTIKFTEEHPWHVQIHRDAFSYGAVAENMDTRVIVDYRFFGYTEPQEANELVFQQHYRDAYDMPQPTFKFTMSQDDRAR
ARRMMDDMCNIALKIGGYLPGSEPQFMTPGLALHLAGTTRCGLDTQKTVGNTHCKVHNFNNLYVGGNGVIETGFAANPTL
TSICYAIRASNDIIAKFG

The query sequence (length=578) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4mif:B 581 581 0.9775 0.9725 0.9725 0.0 4mif:A, 4mif:C, 4mif:D, 4mig:A, 4mig:B, 4mig:C, 4mig:D, 4mih:A, 4mih:B, 4mih:C, 4mih:D, 4mih:E, 4mih:F, 4mih:G, 4mih:H
2 3bg6:A 577 597 0.4394 0.4402 0.4255 2.21e-144 3bg6:B, 3bg6:C, 3bg6:D, 3bg6:E, 3bg6:F, 3bg6:G, 3bg6:H, 3bg7:A, 3bg7:B, 3bg7:C, 3bg7:D, 3bg7:E, 3bg7:F, 3bg7:G, 3bg7:H, 3bly:A, 2f5v:A, 2f6c:A, 3fdy:A, 2igk:A, 2igk:B, 2igk:C, 2igk:D, 2igk:E, 2igk:F, 2igk:G, 2igk:H, 2igm:A, 2igm:B, 2igm:D, 2igm:C, 2igm:E, 2igm:F, 2igm:G, 2igm:H, 2ign:A, 2ign:B, 2ign:D, 2ign:C, 2ign:E, 2ign:F, 2ign:H, 2ign:G, 2igo:A, 2igo:B, 2igo:D, 2igo:C, 2igo:E, 2igo:F, 2igo:H, 2igo:G, 3k4b:A, 3k4c:A, 3k4c:B, 3k4c:C, 3k4c:D, 3k4j:A, 3k4k:A, 3k4l:A, 3k4l:B, 3k4m:A, 3k4m:B, 3k4m:C, 3k4m:D, 3k4m:E, 3k4m:F, 3k4m:G, 3k4m:H, 3k4n:A, 3k4n:B, 3lsh:A, 3lsh:B, 3lsh:C, 3lsh:D, 3lsi:A, 3lsi:B, 3lsk:A, 3lsk:B, 3lsk:C, 3lsk:D, 3lsm:A, 3lsm:B, 4moe:A, 4moe:B, 4moe:C, 4moe:D, 4mof:A, 4mog:A, 4moh:A, 4moi:A, 4moi:B, 4moj:A, 4moj:B, 4moj:C, 4moj:D, 4mok:A, 4mok:B, 4mok:C, 4mok:D, 4mol:A, 4mol:B, 4mol:C, 4mol:D, 4mom:A, 4mom:B, 4mom:C, 4mom:D, 4moo:A, 4mop:A, 4mop:B, 4mop:C, 4mop:D, 4moq:A, 4moq:B, 4mor:A, 4mor:B, 4mor:C, 4mor:D, 4mos:A, 3pl8:A, 1tt0:A, 1tt0:B, 1tt0:C, 1tt0:D, 1tzl:A, 1tzl:B, 1tzl:C, 1tzl:D, 1tzl:E, 1tzl:F, 1tzl:G, 1tzl:H
3 8qve:A 495 571 0.2509 0.2929 0.2539 1.09e-30
4 7dve:A 498 575 0.2509 0.2912 0.2522 3.39e-27
5 7qf8:A 494 567 0.2388 0.2794 0.2434 1.03e-26
6 7qfd:A 458 564 0.2353 0.2969 0.2411 7.15e-25 7qva:A
7 8jej:A 540 161 0.0727 0.0778 0.2609 1.84e-07 8jek:A, 8k6j:A, 8k6k:A, 7w2j:A, 7w2j:D, 7wsq:A, 7wsq:D, 8xcm:A, 8xcn:A
8 8grj:B 531 138 0.0554 0.0603 0.2319 6.34e-04 6a2u:B, 6a2u:D, 8grj:D, 8hdd:A
9 8orh:A 649 115 0.0484 0.0431 0.2435 0.087 8orh:B, 8ors:A, 8ors:B, 7yx3:A, 7yx3:B, 4z24:A, 4z24:B, 4z25:A, 4z25:B, 4z25:C, 4z25:D, 4z25:E, 4z25:F, 4z25:G, 4z25:H, 4z25:I, 4z25:J, 4z25:K, 4z25:L, 4z26:A, 4z26:B, 4z26:C, 4z26:D, 4z26:E, 4z26:F, 4z26:G, 4z26:H
10 5uwy:A 306 33 0.0277 0.0523 0.4848 0.33
11 5xhu:A 329 98 0.0467 0.0821 0.2755 0.79
12 8k40:A 448 83 0.0467 0.0603 0.3253 0.82 8k40:B, 8k41:A
13 7xjv:B 514 127 0.0519 0.0584 0.2362 1.2 7xjv:A, 7xjv:C, 7xjv:D
14 7aaw:A 315 35 0.0277 0.0508 0.4571 1.2 7aaw:B
15 2dki:A 615 50 0.0311 0.0293 0.3600 1.7 2dkh:A
16 4gcm:B 309 32 0.0242 0.0453 0.4375 1.8 4gcm:A
17 4gcm:B 309 61 0.0363 0.0680 0.3443 4.2 4gcm:A
18 2c3e:A 293 49 0.0242 0.0478 0.2857 1.9 1okc:A
19 6lqc:A 450 49 0.0311 0.0400 0.3673 2.1 6lql:A
20 5dbj:E 437 34 0.0225 0.0297 0.3824 2.2 5dbj:A, 5dbj:B, 5dbj:C, 5dbj:D
21 5vil:A 271 66 0.0311 0.0664 0.2727 2.2 4bf2:A, 4bf2:B, 4bhn:A, 4bhn:B, 4bib:A, 4bib:B, 4bic:A, 4bic:B, 4bid:A, 4bid:B, 4bie:A, 4bie:B, 2clq:A, 2clq:B, 6e2m:A, 6e2n:A, 6e2o:A, 6e2o:B, 7mu6:A, 7mu6:B, 7mu7:A, 7mu7:B, 6oyw:A, 6oyw:B, 6oyw:C, 6oyw:D, 5uor:B, 5uox:A, 5uox:B, 5up3:A, 5v19:A, 5v19:B, 5v24:B, 5vil:B, 5vil:C, 5vil:D, 5vio:A, 5vio:B, 5vio:D, 6vre:A, 6vre:B, 3vw6:A, 3vw6:B, 6xih:A
22 1kdg:B 546 65 0.0346 0.0366 0.3077 2.5 1kdg:A, 1naa:A, 1naa:B
23 1kdg:B 546 95 0.0398 0.0421 0.2421 9.0 1kdg:A, 1naa:A, 1naa:B
24 7cyx:A 363 48 0.0277 0.0441 0.3333 2.6 7cyx:B
25 7x07:A 633 116 0.0536 0.0490 0.2672 2.8 7shn:A, 7shn:B, 7vzb:A, 7vzb:B, 7x0t:A, 7x0t:B, 7x1w:A, 7x1w:B, 7xec:A, 7yrq:A, 7yrq:B
26 7x0z:B 580 116 0.0536 0.0534 0.2672 2.8 7shm:A, 7shm:B, 7x0z:A
27 8gym:s1 689 49 0.0294 0.0247 0.3469 2.9 8b6f:AB, 8bqs:AB, 8gym:S1, 8gzu:s1, 8gzu:S1, 7tgh:S1
28 7rr9:A 560 116 0.0536 0.0554 0.2672 3.0 7rr9:B, 7vx8:B, 7vx8:A
29 8il4:C 619 58 0.0346 0.0323 0.3448 4.4 8il4:A, 8il4:B, 8il4:D
30 4mjw:A 532 71 0.0433 0.0470 0.3521 6.5 2jbv:A, 2jbv:B, 3ljp:A, 3ljp:B, 4mjw:B, 3nne:A, 3nne:B, 3nne:C, 3nne:D, 3nne:E, 3nne:F, 3nne:G, 3nne:H
31 5buk:A 434 30 0.0225 0.0300 0.4333 6.8 5buk:B
32 2qxf:A 433 89 0.0398 0.0531 0.2584 7.9
33 5mh4:A 303 32 0.0225 0.0429 0.4062 8.0 5mip:A, 5miq:A, 5mir:A, 5mis:A, 5mit:A, 5mjk:A, 5mjk:B, 5mjk:C, 5mjk:D
34 4js4:A 468 89 0.0398 0.0491 0.2584 8.5 3c94:A, 4hcb:A, 4hcb:B, 4hcc:A, 4hcc:B, 3hl8:A, 3hp9:A, 4jrp:A, 4jrp:B, 4jrq:A, 4jrq:B, 4js4:B, 4js5:A, 4js5:B
35 8jxn:J 541 59 0.0294 0.0314 0.2881 9.5
36 4wzi:B 424 77 0.0346 0.0472 0.2597 9.8 3d3p:A, 1f0j:A, 1f0j:B, 3frg:A, 3g45:A, 3g45:B, 3gwt:A, 3hmv:A, 3hmv:B, 5k6j:A, 3kkt:A, 3kkt:B, 4kp6:A, 5laq:A, 3ly2:A, 3ly2:B, 3ly2:C, 3ly2:D, 3ly2:E, 3ly2:F, 3ly2:G, 3ly2:H, 4myq:A, 4nw7:A, 3o0j:A, 3o56:A, 3o57:A, 8oeg:A, 5ohj:A, 5ohj:B, 2qyl:A, 1ro6:A, 1ro6:B, 1ro9:A, 1ro9:B, 1ror:A, 1ror:B, 1tb5:A, 1tb5:B, 3w5e:A, 3w5e:B, 3wd9:A, 3wd9:B, 4wzi:A, 4x0f:A, 4x0f:B, 1xlx:A, 1xlx:B, 1xlz:A, 1xlz:B, 1xm4:A, 1xm4:B, 1xm6:A, 1xm6:B, 1xmu:A, 1xmu:B, 1xmy:A, 1xmy:B, 1xn0:A, 1xn0:B, 1xos:A, 1xot:B, 1xot:A, 1y2h:A, 1y2h:B, 1y2j:A, 1y2j:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218