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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MFKKYSSLENHYNSKFIEKLYSLGLTGGEWVAREKIHGTNFSLIIERDKVTCAKRTGPILPAEDFFGYEIILKNYADSIK
AVQDIMETSAVVSYQVFGEFAGPGIQKNVDYCDKDFYVFDIIVTTESGDVTYVDDYMMESFCNTFKFKMAPLLGRGKFEE
LIKLPNDLDSVVQDYNFTVDHAGLVDANKCVWNAEAKGEVFTAEGYVLKPCYPSWLRNGNRVAIKCKNSKFSE

The query sequence (length=233) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2hvr:A 319 231 0.9871 0.7210 0.9957 1.54e-173 2hvq:A, 2hvr:B, 2hvs:A, 2hvs:B, 1s68:A
2 1xdn:A 265 109 0.1502 0.1321 0.3211 4.12e-12
3 8tua:A 1329 113 0.1245 0.0218 0.2566 0.079 5d3x:A, 5d3x:B, 5d3y:A, 5d3y:B, 5fi0:A, 5fi0:C, 5fi0:E, 5fi0:G
4 3l86:A 245 140 0.1416 0.1347 0.2357 0.30
5 1qho:A 686 25 0.0429 0.0146 0.4000 1.7 1qhp:A
6 8b6h:DB 604 49 0.0558 0.0215 0.2653 3.9 8b6h:Db, 8bqs:DB, 8bqs:Db, 8gym:c2, 8gym:C2, 8gzu:27, 8gzu:82, 8gzu:c2, 8gzu:C2, 7w5z:C2, 7w5z:c2
7 8a8k:A 317 91 0.0944 0.0694 0.2418 4.6 8a8k:B, 8a8k:C, 8a8k:D, 8a8k:E, 8a8k:F
8 8gym:b4 115 39 0.0515 0.1043 0.3077 6.8 8gym:B4, 8gzu:b4, 8gzu:B4
9 4ee7:A 290 45 0.0730 0.0586 0.3778 7.1
10 8w4g:A 876 52 0.0815 0.0217 0.3654 7.6 8w4i:A, 8w4n:A, 8x8g:A
11 5b2o:A 1455 76 0.0901 0.0144 0.2763 8.2 5b2p:A, 5b2q:A
12 2e7z:A 727 27 0.0515 0.0165 0.4444 8.9
13 1nfg:A 457 91 0.0987 0.0503 0.2527 9.3 1nfg:B, 1nfg:C, 1nfg:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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