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BioLiP
>protein
MFKIVYPNAKDFFSFINSITNVTDSIILNFTEDGIFSRHLTEDKVLMAIMRIPKDVLSEYSIDSPTSVKLDVSSVKKILS
KASKATIELTETDSGLKIIIRDGAKSTIYIKAEKGQVEQLTEPKVNLAVNFTTDESVLNVIAADVTLVGEEMRISTEEDK
IKIEAGEEGKRYVAFLMKDKPLKELSIDTSASSSYSAEMFKDAVKGLRGFSAPTMVSFGENLPMKIDVEAVSGGHMIFWI
APRL

The query sequence (length=244) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2izo:C 244 244 1.0000 1.0000 1.0000 2.66e-178
2 6t7y:A 238 249 0.2459 0.2521 0.2410 5.13e-22
3 5dai:A 247 246 0.2500 0.2470 0.2480 1.88e-20
4 1isq:A 240 246 0.2500 0.2542 0.2480 1.93e-20
5 7rpw:C 245 245 0.2295 0.2286 0.2286 7.17e-12
6 1ud9:A 242 246 0.2295 0.2314 0.2276 1.05e-10 1ud9:B, 1ud9:C, 1ud9:D
7 1rxm:A 245 220 0.2254 0.2245 0.2500 1.54e-05 1rxz:A
8 2io4:B 246 133 0.1639 0.1626 0.3008 1.66e-05 2io4:D
9 3k4x:A 758 262 0.2336 0.0752 0.2176 5.78e-04 6e49:B, 6e49:A, 2od8:A, 3v62:B, 3v62:E, 5zut:A
10 3k4x:A 758 262 0.2295 0.0739 0.2137 0.002 6e49:B, 6e49:A, 2od8:A, 3v62:B, 3v62:E, 5zut:A
11 3k4x:A 758 261 0.2295 0.0739 0.2146 0.002 6e49:B, 6e49:A, 2od8:A, 3v62:B, 3v62:E, 5zut:A
12 6e49:C 254 262 0.2254 0.2165 0.2099 6.29e-04 3v61:B
13 6ke6:RP 2052 87 0.0902 0.0107 0.2529 0.069
14 2o2c:A 564 112 0.1311 0.0567 0.2857 0.28 2o2c:B, 2o2c:C
15 2czy:A 77 65 0.0738 0.2338 0.2769 0.68
16 1vyj:G 260 240 0.1680 0.1577 0.1708 1.5 1axc:A, 1axc:C, 1axc:E, 6cbi:C, 6cbi:A, 6cbi:D, 6cbi:E, 8cob:A, 8cob:C, 8cob:E, 4d2g:C, 4d2g:B, 5e0u:A, 5e0u:B, 5e0u:C, 5e0v:A, 5e0v:B, 6eht:C, 6eht:B, 8f5q:A, 8f5q:C, 8f5q:E, 6gis:A, 8gl9:A, 8gl9:B, 8gla:A, 8gla:B, 6gws:C, 6gws:A, 6gws:B, 6hvo:B, 6hvo:C, 6hvo:A, 5iy4:A, 5iy4:C, 5iy4:E, 6k3a:A, 6k3a:C, 6k3a:E, 7kq0:A, 7kq0:C, 7kq0:E, 7kq1:A, 7kq1:C, 7kq1:E, 7m5l:A, 7m5l:B, 7m5l:C, 7m5m:A, 7m5m:B, 7m5n:B, 7m5n:A, 5mav:C, 5mav:A, 5mav:B, 5mav:F, 5mav:D, 5mav:E, 5mlo:A, 5mlo:C, 5mlo:E, 5mlw:A, 5mlw:C, 5mlw:E, 7nv0:D, 7nv1:D, 3p87:A, 3p87:D, 3p87:B, 3p87:C, 3p87:E, 3p87:F, 6qc0:A, 6qc0:C, 6qc0:E, 6qcg:C, 6qcg:B, 6qcg:F, 6qcg:A, 6qcg:D, 6qcg:E, 7qo1:F, 4rjf:A, 4rjf:C, 4rjf:E, 1u76:A, 1u76:C, 1u76:E, 1u7b:A, 3vkx:A, 1vyj:A, 1vyj:C, 1vyj:E, 1vyj:I, 1vyj:K, 3wgw:A, 3wgw:B, 5yco:A, 5yco:B, 5yco:C, 5yd8:Z, 5yd8:X, 5yd8:Y, 4ztd:B, 4ztd:A, 4ztd:C, 2zvk:A, 2zvk:B, 2zvk:C, 2zvl:A, 2zvl:B, 2zvl:C, 2zvl:D, 2zvl:E, 2zvl:F, 2zvm:A, 2zvm:B, 2zvm:C
17 5y95:A 80 54 0.0697 0.2125 0.3148 2.0
18 1q72:H 220 78 0.0861 0.0955 0.2692 5.0 7lki:DDD, 1qyg:H, 1riu:H, 1riv:H
19 2p0j:A 203 57 0.0697 0.0837 0.2982 5.6 2p0j:B, 1vrr:A, 1vrr:B
20 8w6q:A 173 55 0.0738 0.1040 0.3273 7.6 8w6m:A, 8w6s:A, 8w6u:A, 8w6y:A, 8w73:A, 8w74:A, 8w79:A, 8w7b:A, 8w7o:A, 8w7q:A, 8w7t:A, 8w7u:A, 8w7v:A, 8wpv:A, 8wqu:A, 8wqu:B, 8wqu:C, 8wqu:D, 8wqu:E, 8wqu:F, 8wqu:G, 8wqu:H, 8wqu:I, 8wqu:J, 8wqu:K, 8wqu:L, 8wqu:M, 8wqu:N, 8wqu:O, 8wqu:P, 8wqu:Q, 8wqu:R, 8wqu:S, 8wqu:T, 8wqu:U, 8wqu:V, 8wqu:W, 8wqu:X, 8wqv:A, 8wqv:B, 8wqv:C, 8wqv:D, 8wqv:E, 8wqv:F, 8wqv:G, 8wqv:H, 8wqv:I, 8wqv:J, 8wqv:K, 8wqv:L, 8wqv:M, 8wqv:N, 8wqv:O, 8wqv:P, 8wqv:Q, 8wqv:R, 8wqv:S, 8wqv:T, 8wqv:U, 8wqv:V, 8wqv:W, 8wqv:X, 8wqx:A, 8wqx:B, 8wqx:C, 8wqx:D, 8wqx:E, 8wqx:F, 8wqx:G, 8wqx:H, 8wqx:I, 8wqx:J, 8wqx:K, 8wqx:L, 8wqx:M, 8wqx:N, 8wqx:O, 8wqx:P, 8wqx:Q, 8wqx:R, 8wqx:S, 8wqx:T, 8wqx:U, 8wqx:V, 8wqx:W, 8wqx:X, 8wqy:A, 8wqy:B, 8wqy:C, 8wqy:D, 8wqy:E, 8wqy:F, 8wqy:G, 8wqy:H, 8wqy:I, 8wqy:J, 8wqy:K, 8wqy:L, 8wqy:M, 8wqy:N, 8wqy:O, 8wqy:P, 8wqy:Q, 8wqy:R, 8wqy:S, 8wqy:T, 8wqy:U, 8wqy:V, 8wqy:W, 8wr0:A, 8wr0:B, 8wr0:C, 8wr0:D, 8wr0:E, 8wr0:F, 8wr0:G, 8wr0:H, 8wr0:I, 8wr0:J, 8wr0:K, 8wr0:M, 8wr0:N, 8wr0:O, 8wr0:P, 8wr0:Q, 8wr0:R, 8wr0:S, 8wr0:T, 8wr0:U, 8wr0:V, 8wr0:W, 8wr0:X, 8wr0:L
21 3ch8:A 190 117 0.1352 0.1737 0.2821 8.4 2qbw:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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