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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MFKHTRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSFLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYL
LEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYS
MTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGIIVPGDMKEIEHSEFSHVLMNFSDGDGSKAFEGQVAKDGEKFT
YQENPEAMGGIPHIKPGDPRLHNHQG

The query sequence (length=266) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1jku:A 266 266 0.9962 0.9962 0.9962 0.0 1jku:F, 1jku:B, 1jku:C, 1jku:D, 1jku:E, 1jkv:A, 1jkv:F, 1jkv:B, 1jkv:C, 1jkv:D, 1jkv:E, 1o9i:A, 1o9i:F, 1o9i:B, 1o9i:C, 1o9i:D, 1o9i:E
2 2v8t:A 302 201 0.2444 0.2152 0.3234 5.57e-25 6kk8:A, 6kk8:B, 2v8t:B, 2v8u:A, 2v8u:B
3 4r42:C 220 192 0.2180 0.2636 0.3021 3.59e-18 6j42:A, 6j42:B, 6j42:C, 4r42:A, 4r42:B
4 2vd3:A 289 108 0.1015 0.0934 0.2500 0.14 2vd3:B
5 3k13:C 287 78 0.0752 0.0697 0.2564 0.42 3k13:A, 3k13:B
6 8eo4:F 95 63 0.0677 0.1895 0.2857 1.2 8e3k:F, 8e3r:F, 8e4h:F, 8e5y:F, 8ebh:F, 8ee9:F, 8ej6:F, 8ej8:F, 8ek3:F, 8ek8:F, 8ek8:E, 8ekj:F, 8eku:F, 8ekv:F, 8ekz:F, 8em9:F, 8emd:F, 8eng:F, 8eo1:F, 8eqg:F, 8eqk:F, 8eql:F, 8evh:O, 8evi:O, 8evj:O, 1pue:E, 1pue:F, 8smh:F, 8smj:F, 8sp1:F, 8t9u:F, 8vdh:F, 8vdi:F
7 4v1z:A 440 53 0.0789 0.0477 0.3962 1.5 4v20:A
8 7am2:BT 300 50 0.0602 0.0533 0.3200 2.3
9 7dlw:B 419 95 0.0977 0.0621 0.2737 3.2 7dlw:A, 7dlw:C, 7dlw:D, 7dly:A, 7dly:B
10 7v9x:A 314 68 0.0639 0.0541 0.2500 6.5 8qbk:A, 8qbk:U, 8qbk:K, 8qbk:P, 8qbl:A, 8qbl:K, 8qbl:P, 8qbl:I, 8qbl:U, 8qbl:Z, 8qbm:A, 8qbm:K, 8qbm:I, 8qbm:P, 8qbm:U, 8qbm:Z, 7v9u:A, 7v9u:B, 7v9x:B, 7xjg:A, 7xjg:B
11 6xw2:A 387 75 0.0714 0.0491 0.2533 7.7
12 6c8z:A 488 46 0.0526 0.0287 0.3043 8.8 6xio:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218