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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MFKGIVQGAGIIKKISKNDDTQRHGITFPKDILESVEKGTVMLVNGCSLTVVRISGDVVYFDIDQAINTTTFRELEVGNK
VNLEVRPEFGSLLGKGALTGNIKGVATVDNITEEEDRLKVYIKIPKDLLSEDHIGINGVSHSIEEISDDIIFINYPKNLS
ITTNLGTLEKGSDVNVETLN

The query sequence (length=180) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3a35:A 184 184 1.0000 0.9783 0.9783 1.57e-125 3a35:B, 3a3b:B, 3a3b:A, 3a3g:A, 3a3g:B
2 3ddy:A 175 184 0.5389 0.5543 0.5272 2.79e-57
3 1hze:A 97 95 0.1833 0.3402 0.3474 1.13e-12 1hze:B, 1i18:A, 1i18:B, 1pkv:A, 1pkv:B
4 1hze:A 97 84 0.1333 0.2474 0.2857 0.20 1hze:B, 1i18:A, 1i18:B, 1pkv:A, 1pkv:B
5 4gqn:B 205 190 0.2500 0.2195 0.2368 5.05e-08 4e0f:A, 4e0f:B, 4g6i:A, 4g6i:B, 4g6i:C, 4gqn:A, 4gqn:C
6 4gqn:B 205 86 0.1500 0.1317 0.3140 0.25 4e0f:A, 4e0f:B, 4g6i:A, 4g6i:B, 4g6i:C, 4gqn:A, 4gqn:C
7 1kzl:A 202 192 0.2667 0.2376 0.2500 6.88e-05
8 2nvv:A 496 73 0.1111 0.0403 0.2740 2.9 2nvv:B, 2nvv:C, 2nvv:D, 2nvv:E
9 8cej:A 449 38 0.0833 0.0334 0.3947 4.2 8cej:B, 8cej:C, 8cej:D, 8cek:A, 8cek:B, 8cek:C, 8cek:D
10 3taz:B 433 49 0.0944 0.0393 0.3469 4.9 3tal:A, 3tal:B, 3taz:A
11 8sp4:A 859 75 0.1111 0.0233 0.2667 5.7 8spg:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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