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BioLiP
>protein
MFIRIKCFSKQPIAKKVSREVSAYLEYTGNNTWEGHISGQGVSNLQTKLINVGKGVKVVCNYQDKVLFAIGNVAMSDTGS
V

The query sequence (length=81) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8k22:A 929 81 1.0000 0.0872 1.0000 3.20e-50 8k21:a, 8k22:a, 8k23:A, 8k23:a, 8k24:a, 8k24:A, 8k25:A, 8k25:a
2 6lvb:A 762 31 0.1481 0.0157 0.3871 0.29 6lvb:C, 6lvb:E, 6lvb:G, 6lvc:A, 6lvc:C, 6lvv:A, 6lvv:C, 6lvv:E, 6lvv:G, 6lvv:I, 6lvv:K, 6lvv:M, 6lvv:O, 7w8j:A, 7w8j:C, 7w8j:E, 7w8j:G
3 4r83:A 474 51 0.1605 0.0274 0.2549 1.1 4r83:B, 4r83:C, 4r83:D, 4r84:A, 4r84:B, 4r84:C, 4r84:D, 4r9v:A
4 4s3q:A 682 40 0.1728 0.0205 0.3500 2.7 4s3r:A
5 2nvo:A 496 29 0.1358 0.0222 0.3793 7.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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