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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MFIKAERLLIRKFEFKDWEAVHEYTSDSDVMKYIPEGVFTEEDTRNFVNKNMGAKNFPVILIGENILVGHIVFHKYFGEH
TYEIGWVFNPKYFNKGYASEAAQATLKYGFKEMKLHRIIATCQPENTPSYRVMEKIGMRREGYFKKCIPHGNEWWDEYYY
AILEEE

The query sequence (length=166) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3fbu:A 166 166 1.0000 1.0000 1.0000 3.35e-124
2 7kyj:B 194 150 0.2711 0.2320 0.3000 4.19e-18 6edd:A, 6edd:B, 6edv:A, 7kpp:A, 7kpp:B, 7kps:A, 7kps:B, 7kye:A, 7kyj:A
3 6c32:A 209 81 0.1867 0.1483 0.3827 9.99e-11 6c37:A
4 6d72:B 176 151 0.2229 0.2102 0.2450 1.09e-07 6d72:A
5 6vfn:A 167 139 0.2229 0.2216 0.2662 2.40e-07 6vfn:F, 6vfn:B, 6vfn:C, 6vfn:D, 6vfn:E, 6vfn:H, 6vfn:I, 6vfn:J, 6vfn:G, 6vfn:L, 6vfn:K
6 3wr7:A 170 137 0.2108 0.2059 0.2555 1.37e-06 4r9m:A, 3wr7:C, 3wr7:B, 3wr7:D
7 2ge3:A 164 84 0.1446 0.1463 0.2857 1.42e-04 2ge3:B, 2ge3:C
8 8q6u:B 166 64 0.1205 0.1205 0.3125 1.99e-04 8q6u:A
9 6e1x:C 176 142 0.1867 0.1761 0.2183 0.001 5cnp:B, 5cnp:D, 5cnp:F, 6cx8:A, 6cx8:B, 6cx8:C, 6cx8:D, 6cx8:E, 6cx8:F, 6e1x:A, 6e1x:B, 6e1x:D, 4mhd:A, 4mhd:B, 4mhd:C, 4mi4:A, 4mi4:B, 4mi4:C, 4ncz:A, 4ncz:C, 4ncz:B, 4r57:A, 4r57:B, 4r57:C, 4r57:D, 4r57:E, 4r57:F, 4r57:G, 4r57:H, 4r57:I, 4r57:J, 4r57:K, 4r57:L, 4r87:A, 4r87:B, 4r87:C, 4r87:D, 4r87:E, 4r87:F, 4r87:G, 4r87:H, 4r87:I, 4r87:J, 4r87:K, 4r87:L, 5ug4:A, 5ug4:B, 5ug4:C, 4ygo:A, 4ygo:C, 4ygo:D, 4ygo:E
10 7ovu:A 196 57 0.0904 0.0765 0.2632 0.011
11 2zw4:A 294 73 0.1084 0.0612 0.2466 0.012 2zw4:C, 2zw5:A, 2zw5:B, 2zw7:A, 2zw7:B
12 1yre:B 187 106 0.1506 0.1337 0.2358 0.080 1yre:A, 1yre:C, 1yre:D
13 8gxf:B 187 85 0.1325 0.1176 0.2588 0.12 8gxf:A, 8gxf:C, 8gxf:D
14 8gxk:B 188 129 0.1747 0.1543 0.2248 0.26 8gxk:A, 8gxk:C, 8gxk:D
15 3owc:A 172 80 0.1024 0.0988 0.2125 0.34 3owc:B
16 2bue:A 179 56 0.0843 0.0782 0.2500 1.00 2prb:A, 2qir:A, 1v0c:A, 2vqy:A
17 8a9n:A 150 57 0.0964 0.1067 0.2807 1.3 8a9n:B, 8a9o:A, 8a9o:B
18 2vi7:C 165 85 0.1265 0.1273 0.2471 1.5
19 6bff:A 178 153 0.1627 0.1517 0.1765 2.0 6bff:B, 6bfh:A
20 6ul2:A 526 28 0.0663 0.0209 0.3929 2.6 8tti:A, 8tti:B, 8tti:C, 8tti:D, 8ttj:A, 8ttj:B, 8ttj:C, 8ttj:D, 6ul2:B, 6ul2:C, 6ul2:D
21 5ab6:D 396 24 0.0542 0.0227 0.3750 2.8 5ab6:A, 5ab6:B, 5ab6:C, 5ab6:E, 5ab6:F, 5ab7:A, 5ab7:B, 5ab7:C, 5ab7:D, 5ab7:E, 5ab7:F
22 6qps:A 447 33 0.0783 0.0291 0.3939 3.1 6qps:B
23 6q8j:A 188 65 0.1265 0.1117 0.3231 3.1
24 5o9z:L 459 39 0.0843 0.0305 0.3590 3.6
25 7pvx:A 60 42 0.0843 0.2333 0.3333 5.9 7pvx:C
26 5mo4:A 429 44 0.0904 0.0350 0.3409 9.1 3cs9:B, 3cs9:C, 2hz0:B, 6npe:B, 6npu:B, 6npv:B, 3pyy:B, 8ssn:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218