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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MFEVPITLTNRKFAQRRKLKYQYINYISRRFDRISKSDEERKFWKKYEKPEKSFEIWRTVSSQNKQPINKQKMTYHNFKK
IEKIPLRKMEIPLLHCTKENKLYFQSISRGLEPLKTSTSEVRNYRTRHIVTLTDLLHLNVSRHNWSLAYKIFATLIRIPG
VQIKSLWGIGVEILDNLSNSSSGLDFLQWMCQIYSSKSRFVQNINYRSIVPPFQTGSRTHTAKFAITYLWSSLINCQKSM
EPTENDLLQELIDKISEWVLTPPFMEDAEVWFIYASCHLLKADTLSRQFVNDNKNNDLIGLDRDIKINQVIKHIHYVRTF
LKICLDKGGFAVPSRLIENQLKSFESRLY

The query sequence (length=349) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5w5y:Q 349 349 1.0000 1.0000 1.0000 0.0 5w64:Q, 5w65:Q, 5w66:Q
2 6rqh:R 330 351 0.9398 0.9939 0.9345 0.0 6rql:R, 6rrd:R, 6rui:R, 6ruo:R, 6rwe:R, 6tps:R
3 5n61:R 303 346 0.8309 0.9571 0.8382 0.0
4 7z8e:A 590 38 0.0344 0.0203 0.3158 3.9
5 1sy7:A 698 93 0.0602 0.0301 0.2258 4.7 1sy7:B
6 2n2x:B 30 28 0.0287 0.3333 0.3571 5.3
7 8yhe:H 524 47 0.0401 0.0267 0.2979 7.3 8yhd:H
8 7xhn:K 230 87 0.0802 0.1217 0.3218 7.9 7xho:K
9 8z9e:H 553 47 0.0401 0.0253 0.2979 8.8
10 7ccf:A 405 67 0.0630 0.0543 0.3284 9.0 5gwe:A, 5gwe:B, 5gwe:C, 5gwe:D, 5xjn:A
11 8z99:H 582 47 0.0401 0.0241 0.2979 9.3 8yhd:I, 8yhd:L, 8yhe:I, 8yhe:L, 8z4j:H, 8z4j:I, 8z4j:L, 8z4l:H, 8z4l:I, 8z4l:L, 8z99:I, 8z99:L, 8z9c:H, 8z9c:I, 8z9c:L, 8z9e:I, 8z9e:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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