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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIK
EADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRMAESIRRIFDANTKPNLNLQVLSNP
EFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISAL
CEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIID
SLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHDQVSRLVTISKDPYEACD
GAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKV

The query sequence (length=460) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3khu:B 467 466 0.9957 0.9807 0.9828 0.0 6c4j:A, 6c4j:B, 6c4j:C, 6c4j:D, 6c4j:E, 6c4j:F, 6c4j:G, 6c4j:H, 6c4j:I, 6c4j:J, 6c4j:K, 6c4j:L, 6c58:A, 6c58:B, 6c58:C, 6c58:D, 6c58:E, 6c58:F, 6c5a:A, 6c5a:B, 6c5a:C, 6c5a:D, 6c5a:E, 6c5a:F, 6c5z:A, 6c5z:B, 6c5z:C, 6c5z:D, 6c5z:E, 6c5z:F, 3khu:A, 3khu:C, 3khu:D, 3khu:E, 3khu:F, 3prj:A, 3prj:B, 3prj:C, 3prj:D, 3prj:E, 3prj:F, 3ptz:A, 3ptz:B, 3ptz:C, 3ptz:D, 3ptz:E, 3ptz:F, 2q3e:A, 2q3e:B, 2q3e:C, 2q3e:D, 2q3e:E, 2q3e:F, 2q3e:G, 2q3e:H, 2q3e:I, 2q3e:J, 2q3e:K, 2q3e:L, 2qg4:A, 2qg4:B, 2qg4:C, 2qg4:D, 2qg4:E, 2qg4:F, 2qg4:G, 2qg4:H, 3tdk:A, 3tdk:B, 3tdk:G, 3tdk:H, 3tdk:L, 3tdk:K, 3tdk:F, 3tdk:E, 3tdk:D, 3tdk:C, 3tdk:J, 3tdk:I, 5tjh:A, 5tjh:B, 5tjh:C, 5tjh:D, 5tjh:E, 5tjh:F, 5vr8:A, 5vr8:B, 5vr8:C, 5vr8:D, 5vr8:E, 5vr8:F
2 4edf:A 431 459 0.9348 0.9977 0.9368 0.0 4edf:B, 4edf:C, 4edf:D
3 6om8:D 468 461 0.6587 0.6474 0.6573 0.0 6om8:A, 6om8:B, 6om8:C, 6om8:E, 6om8:F, 6om8:G, 6om8:H, 6om8:I, 6om8:J, 6om8:K, 6om8:L
4 4a7p:A 429 460 0.3957 0.4242 0.3957 1.29e-92 4a7p:B
5 2y0c:A 461 461 0.3609 0.3601 0.3601 3.50e-80 2y0c:B, 2y0c:C, 2y0c:D, 2y0d:A, 2y0d:B, 2y0d:C, 2y0d:D, 2y0e:A, 2y0e:B, 2y0e:C, 2y0e:D
6 3gg2:A 431 453 0.3348 0.3573 0.3400 7.37e-74 3gg2:D, 3gg2:B, 3gg2:C
7 3vtf:A 432 423 0.3043 0.3241 0.3310 7.44e-64
8 1mfz:A 436 386 0.2348 0.2477 0.2798 6.09e-33 1mfz:B, 1mfz:C, 1mfz:D, 1muu:C, 1muu:A, 1muu:B, 1muu:D, 1mv8:B, 1mv8:A, 1mv8:C, 1mv8:D
9 4xr9:A 456 461 0.2630 0.2654 0.2625 3.22e-28
10 4r16:A 418 464 0.2630 0.2895 0.2608 3.34e-27 4r16:B
11 7kws:A 390 378 0.2239 0.2641 0.2725 1.96e-25 7kws:B
12 3pjg:A 389 368 0.2283 0.2699 0.2853 2.71e-25 3pln:A, 3plr:A
13 1dli:A 402 371 0.1978 0.2264 0.2453 2.96e-21 1dlj:A
14 3ojl:A 418 445 0.2304 0.2536 0.2382 2.37e-20 3ojl:B, 3ojo:A, 3ojo:B
15 7n8w:A 214 61 0.0413 0.0888 0.3115 1.5 7n8w:B
16 4j7c:B 217 43 0.0348 0.0737 0.3721 1.6 2hms:A, 2hms:B, 2hms:C, 2hms:D, 2hmt:A, 2hmt:B, 2hmu:A, 2hmu:B, 2hmv:A, 2hmv:B, 2hmw:A, 2hmw:B, 4j7c:A, 4j7c:C, 4j7c:D, 4j7c:E, 4j7c:F, 4j7c:G, 4j7c:H, 4j90:A, 4j90:B, 4j91:A, 4j91:B, 4j91:C, 4j91:D, 8k16:A, 8k16:B, 8k1k:A, 8k1k:B, 8k1s:A, 8k1s:B, 8k1s:C, 8k1s:D, 8k1s:E, 8k1s:F, 8k1s:G, 8k1s:H, 8k1t:A, 8k1t:B, 8k1t:C, 8k1t:D, 8k1t:E, 8k1t:F, 8k1t:G, 8k1t:H, 8k1u:A, 8k1u:B, 8k1u:C, 8k1u:D, 8k1u:E, 8k1u:F, 8k1u:G, 8k1u:H, 1lsu:A, 1lsu:B, 6s2j:A, 6s2j:B, 6s5b:A, 6s5b:B, 6s5b:C, 6s5b:D, 6s5b:E, 6s5b:F, 6s5b:G, 6s5b:H, 6s5c:A, 6s5c:B, 6s5d:A, 6s5d:B, 6s5e:A, 6s5e:B, 6s5e:C, 6s5e:D, 6s5e:E, 6s5e:F, 6s5e:G, 6s5e:H, 6s5g:A, 6s5g:B, 6s5g:C, 6s5g:D, 6s5g:E, 6s5g:F, 6s5g:G, 6s5g:H, 6s5n:A, 6s5n:B, 6s5n:C, 6s5n:D, 6s5n:E, 6s5n:F, 6s5n:G, 6s5n:H, 6s5o:A, 6s5o:B, 6s5o:C, 6s5o:D, 6s5o:E, 6s5o:F, 6s5o:G, 6s5o:H, 6s7r:A, 6s7r:B, 6s7r:C, 6s7r:D, 6s7r:E, 6s7r:F, 6s7r:G, 6s7r:H, 6s7r:I, 6s7r:J, 6s7r:K, 6s7r:L, 6s7r:M, 6s7r:N, 6s7r:O, 6s7r:P, 8xmh:A, 8xmh:B, 8xmh:C, 8xmh:D, 8xmh:E, 8xmh:F, 8xmh:G, 8xmh:H, 8xmi:A, 8xmi:B, 8xmi:C, 8xmi:D, 8xmi:E, 8xmi:F, 8xmi:G, 8xmi:H
17 5w4y:A 450 59 0.0348 0.0356 0.2712 2.1 5w4y:B, 5w4z:A, 5w4z:B
18 3nyn:A 553 46 0.0370 0.0307 0.3696 3.8 2acx:A, 2acx:B, 3nyn:B, 3nyo:A, 3nyo:B
19 4f4c:A 1250 207 0.0957 0.0352 0.2126 4.8
20 7ye1:C 1312 152 0.0804 0.0282 0.2434 5.0 7ye2:C
21 6kzs:A 396 97 0.0543 0.0631 0.2577 5.7 6kzt:A
22 7nay:A 322 71 0.0457 0.0652 0.2958 5.9
23 3be7:A 398 98 0.0500 0.0578 0.2347 6.5 3be7:E, 3be7:B, 3be7:D, 3be7:C, 3be7:F, 3be7:G, 3be7:H, 3dug:A, 3dug:B, 3dug:C, 3dug:D, 3dug:E, 3dug:F, 3dug:G, 3dug:H
24 4c0b:B 430 50 0.0304 0.0326 0.2800 9.8 4c0b:A, 4c0h:A, 2npi:A, 2npi:B, 4oi4:A, 4oi4:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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