Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MFDKHTHTLIAQRLDQAEKQREQIRAISLDYPEITIEDAYAVQREWVRLKIAEGRTLKGHKIGLTSKAMQASSQISEPDY
GALLDDMFFHDGSDIPTDRFIVPRIEVELAFVLAKPLRGPNCTLFDVYNATDYVIPALELIDARCHNIKVFDTISDNAAN
AGVILGGRPIKPDELDLRWISALMYRNGVIEETGVAAGVLNHPANGVAWLANKLAPYDVQLEAGQIILGGSFTRPVPARK
GDTFHVDYGNMGSISCRFV

The query sequence (length=259) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2eb6:A 267 267 1.0000 0.9700 0.9700 0.0 2eb5:A, 2eb5:B, 2eb5:C, 2eb5:D, 2eb5:E, 2eb6:B, 2eb6:C, 2eb6:D, 2eb6:E
2 5d2g:A 263 253 0.4131 0.4068 0.4229 3.36e-58 5d2h:A, 5d2i:A, 5d2i:B, 5d2j:A, 5d2j:B, 5d2k:A, 5d2k:B
3 6c95:A 773 57 0.0656 0.0220 0.2982 0.18 6c9m:A, 6c9m:C, 6ppl:B, 6pw9:B
4 4r0o:A 106 30 0.0425 0.1038 0.3667 0.39 1baw:A, 1baw:B, 1baw:C, 3bqv:A, 3cvb:A, 3cvb:B, 3cvc:A, 3cvd:A, 3cvd:B, 3cvd:C, 2q5b:A, 2q5b:B, 2q5b:C, 4r0o:B, 4r0o:C, 4r0o:D, 2w88:A, 2w88:B, 2w88:C, 2w8c:A, 2w8c:B
5 2xzj:A 386 99 0.1120 0.0751 0.2929 0.63 4m4v:A, 2xzi:A, 2xzi:B, 2xzj:B, 2xzk:A, 2xzk:B
6 9f1b:DB 837 57 0.0656 0.0203 0.2982 0.90 9f1c:DB, 9f1d:DB, 9fpz:B, 9fq0:B
7 2hsi:B 228 71 0.0849 0.0965 0.3099 3.5 2hsi:A
8 6n7p:A 186 75 0.0695 0.0968 0.2400 5.1 6n7r:A, 6n7x:A, 7oqc:B, 7oqe:B, 8w2o:A, 5zwn:Q
9 7nbu:Y 121 102 0.1042 0.2231 0.2647 6.3

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218