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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MFDKHTHTLIAQRLDQAEKQREQIRAISLDYPEITIEDAYAVQREWVRLKIAEGRTLKGHKIGLTSKAMQASSQISEPDY
GALLDDMFFHDGSDIPTDRFIVPRIEVELAFVLAKPLRGPNCTLFDVYNATDYVIPALELIDARCHNIDPTQRPRKVFDT
ISDNAANAGVILGGRPIKPDELDLRWISALMYRNGVIEETGVAAGVLNHPANGVAWLANKLAPYDVQLEAGQIILGGSFT
RPVPARKGDTFHVDYGNMGSISCRFV

The query sequence (length=266) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2eb6:A 267 267 1.0000 0.9963 0.9963 0.0 2eb5:A, 2eb5:B, 2eb5:C, 2eb5:D, 2eb5:E, 2eb6:B, 2eb6:C, 2eb6:D, 2eb6:E
2 5d2g:A 263 259 0.3910 0.3954 0.4015 3.34e-56 5d2h:A, 5d2i:A, 5d2i:B, 5d2j:A, 5d2j:B, 5d2k:A, 5d2k:B
3 6c95:A 773 57 0.0639 0.0220 0.2982 0.18 6c9m:A, 6c9m:C, 6ppl:B, 6pw9:B
4 4r0o:A 106 30 0.0414 0.1038 0.3667 0.44 1baw:A, 1baw:B, 1baw:C, 3bqv:A, 3cvb:A, 3cvb:B, 3cvc:A, 3cvd:A, 3cvd:B, 3cvd:C, 2q5b:A, 2q5b:B, 2q5b:C, 4r0o:B, 4r0o:C, 4r0o:D, 2w88:A, 2w88:B, 2w88:C, 2w8c:A, 2w8c:B
5 2xzj:A 386 99 0.1090 0.0751 0.2929 0.49 4m4v:A, 2xzi:A, 2xzi:B, 2xzj:B, 2xzk:A, 2xzk:B
6 9f1b:DB 837 57 0.0639 0.0203 0.2982 0.94 9f1c:DB, 9f1d:DB, 9fpz:B, 9fq0:B
7 7vhv:A 485 105 0.0940 0.0515 0.2381 2.5 7vhv:D, 7vhv:C, 7vhv:B
8 2hsi:B 228 71 0.0827 0.0965 0.3099 4.1 2hsi:A
9 7p1o:X 386 99 0.1053 0.0725 0.2828 8.8 7p1d:A, 7p1e:A, 7p1f:B, 7p1f:A, 7p1o:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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