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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MFAWWGRTVYQFRYIVIGVMVALCLGGGVYGISLGNHVTQSGFYDEGSQSVAASLIGDEVYGRDRTSHVVAILTPPDDKK
VTDKAWQKKVTEELDQVVKDHEDQIVGWVGWLKAPDTTDPTVSAMKTQDLRHTFISIPLQGDDDDEILKNYQVVEPELQQ
VNGGDIRLAGLNPLASELTGTIGEDQKRAEVAAIPLVAVVLFFVFGTVIAAALPAIIGGLAIAGALGIMRLVAEFTPVHF
FAQPVVTLIGLGIAIDYGLFIVSRFREEIAEGYDTEAAVRRTVMTSGRTVVFSAVIIVASSVPLLLFPQGFLKSITYAII
ASVMLAAILSITVLAAALAILGPRVDALGVTTREEVERGFWGRLVNVVMKRPIAFAAPILVVMVLLIIPLGQLSLGGISE
KYLPPDNAVRQSQEQFDKLFPGFRTEPLTLVMKREDGEPITDAQIADMRAKALTVSGFTDPDNDPEKMWKERPANDSGSK
DPSVRVIQNGLENRNDAAKKIDELRALQPPHGIEVFVGGTPALEQDSIHSLFDKLPLMALILIVTTTVLMFLAFGSVVLP
IKAALMSALTLGSTMGILTWMFVDGHGSGLMNYTPQPLMAPMIGLIIAVIWGLSTDYEVFLVSRMVEARERGMSTAEAIR
IGTATTGRLITGAALILAVVAGAFVFSDLVMMKYLAFGLLIALLLDATIIRMFLVPAVMKLLGDDCWWAPRWMKRVQEKL
GLGETELPDERK

The query sequence (length=732) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7k7m:B 757 757 0.9945 0.9617 0.9617 0.0 7k7m:A, 7n6b:A
2 6ajf:A 901 719 0.9740 0.7913 0.9917 0.0 6ajg:A, 6ajh:A, 6ajj:A, 7c2m:A, 7c2n:A, 6or2:A, 7wnx:A
3 6aji:A 873 724 0.9454 0.7927 0.9558 0.0
4 7nvh:A 717 728 0.7172 0.7322 0.7212 0.0
5 1w5c:D 350 68 0.0369 0.0771 0.3971 1.2 1w5c:J
6 5kod:D 566 158 0.0492 0.0636 0.2278 1.7
7 8kde:D 351 68 0.0355 0.0741 0.3824 3.0 3a0b:D, 3a0b:d, 3a0h:D, 3a0h:d, 2axt:D, 2axt:d, 5b5e:D, 5b5e:d, 5b66:D, 5b66:d, 8bd3:D, 8bd3:d, 8c29:D, 8c29:d, 7cji:D, 7cji:d, 7cjj:D, 7cjj:d, 7cou:D, 7cou:d, 7czl:d, 7czl:D, 7d1t:D, 7d1t:d, 7d1u:D, 7d1u:d, 6dhe:D, 6dhe:d, 6dhf:D, 6dhf:d, 6dhg:D, 6dhg:d, 6dhh:D, 6dhh:d, 6dho:D, 6dho:d, 6dhp:D, 6dhp:d, 7dxa:d, 7dxh:d, 5e79:D, 5e79:d, 5e7c:D, 5e7c:d, 7eda:D, 9evx:D, 9evx:d, 8ez5:D, 8ez5:d, 8f4c:D, 8f4c:d, 8f4d:D, 8f4d:d, 8f4e:D, 8f4e:d, 8f4f:D, 8f4f:d, 8f4g:D, 8f4g:d, 8f4h:D, 8f4h:d, 8f4i:D, 8f4i:d, 8f4j:D, 8f4j:d, 8f4k:D, 8f4k:d, 4fby:D, 4fby:Q, 8gn0:D, 8gn0:d, 8gn1:D, 8gn1:d, 8gn2:D, 8gn2:d, 5gth:D, 5gth:d, 5gti:D, 5gti:d, 5h2f:D, 5h2f:d, 4il6:D, 4il6:d, 8ir5:D, 8ir5:d, 8ir6:D, 8ir6:d, 8ir7:D, 8ir7:d, 8ir8:D, 8ir8:d, 8ir9:D, 8ir9:d, 8ira:D, 8ira:d, 8irb:D, 8irb:d, 8irc:D, 8irc:d, 8ird:D, 8ird:d, 8ire:D, 8ire:d, 8irf:D, 8irf:d, 8irg:D, 8irg:d, 8irh:D, 8irh:d, 8iri:D, 8iri:d, 4ixq:D, 4ixq:d, 4ixr:D, 4ixr:d, 3jcu:D, 3jcu:d, 6jlj:D, 6jlj:d, 6jlk:D, 6jlk:d, 6jll:D, 6jll:d, 6jlm:D, 6jlm:d, 6jln:D, 6jln:d, 6jlo:D, 6jlo:d, 6jlp:D, 6jlp:d, 5kaf:D, 5kaf:d, 5kai:D, 5kai:d, 6kac:D, 6kac:d, 6kad:D, 6kad:d, 6kaf:d, 6kaf:D, 3kzi:D, 5mdx:D, 5mdx:d, 5mx2:D, 5mx2:d, 7nho:D, 7nhp:D, 7nhq:D, 7oui:D, 7oui:d, 4pbu:D, 4pbu:d, 7pi0:D, 7pi0:d, 7pi5:D, 7pi5:d, 7pin:D, 7pin:d, 7pin:D1, 7pin:d1, 7piw:d, 7piw:d1, 7piw:D, 7piw:D1, 4pj0:D, 4pj0:d, 7pnk:D, 7pnk:d, 8r2i:D, 7rf1:D, 7rf1:d, 7rf2:D, 7rf2:d, 7rf3:D, 7rf3:d, 7rf4:D, 7rf4:d, 7rf5:D, 7rf5:d, 7rf6:D, 7rf6:d, 7rf7:D, 7rf7:d, 7rf8:D, 7rf8:d, 4rvy:D, 4rvy:d, 1s5l:D, 1s5l:d, 5tis:D, 5tis:d, 4tnh:D, 4tnh:d, 4tni:D, 4tni:d, 4tnj:D, 4tnj:d, 4tnk:D, 4tnk:d, 4ub6:D, 4ub6:d, 4ub8:D, 4ub8:d, 5v2c:D, 5v2c:d, 4v62:AD, 4v62:BD, 4v82:AD, 4v82:BD, 6w1o:D, 6w1o:d, 6w1p:D, 6w1p:d, 6w1q:D, 6w1q:d, 6w1r:D, 6w1r:d, 6w1t:D, 6w1t:d, 6w1u:D, 6w1u:d, 6w1v:D, 6w1v:d, 5ws5:D, 5ws5:d, 5ws6:D, 5ws6:d, 3wu2:D, 3wu2:d, 5xnl:D, 5xnl:d, 5xnm:D, 5xnm:d, 6yp7:d, 6yp7:D, 7yq2:D, 7yq2:d, 7yq7:D, 7yq7:d, 8zee:D, 5zzn:D, 5zzn:d
8 6cwq:A 308 80 0.0328 0.0779 0.3000 3.3 6cwo:A, 6cwo:B, 6cwp:B, 6cwp:A, 6cwq:B, 8dq4:A, 8dq4:B, 8dq5:A
9 7fee:A 486 22 0.0137 0.0206 0.4545 7.7 6kqi:A, 5u09:A
10 8eqm:D 338 68 0.0328 0.0710 0.3529 9.4 8eqm:d, 7sa3:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218