Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MFAKAFRVKSNTAIKGSDRRKLRADVTTAFPTLGTDQVSELVPGKEELNIVKLYAHKGDAVTVYVSGGNPILFELEKNLY
PTVYTLWSYPDLLPTFTTWPLVLEKLVGGADLMLPGLVMPPAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSG
LKGRGFSVLHTYQDHLWRSGNKSLQEQMDELLQQCFLHALKCRVKKADLPLLTSTFLGSHMFSCCPEGRQLDIKKSSYKK
LSKFLQQMQQEQIIQVKELSKGVESIVAVDWQPYHPPDIKPLYCVPASMTLLFQESGHKKGSFLEGSEVRTIVINYAKKN
DLVDADNKNLVRLDPILCDCILEKNEQHTVMKLPWDSLLTRCLEKLQPAYQVTLPGQEPIVKKGRICPIDITLAQRASNK
KVTVVRNLEAYGLDPYSVAAILQQRCQASTTVNPAPGAKDSLQVQIQGNQVHHLGWLLLEEYQLPRKHIQGLEKALKPG

The query sequence (length=479) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5oa3:0 479 479 1.0000 1.0000 1.0000 0.0
2 5ons:A 181 183 0.1065 0.2818 0.2787 3.21e-11 5vyc:k1, 5vyc:k6, 5vyc:k2, 5vyc:k5, 5vyc:k3, 5vyc:k4
3 2rfk:A 334 60 0.0501 0.0719 0.4000 0.048 3hax:A, 3hay:A, 3hjw:A, 3hjy:A, 2hvy:A, 3lwo:A, 3lwp:A, 3lwq:A, 3lwr:A, 3lwv:A, 3mqk:A
4 3b1j:A 338 79 0.0418 0.0592 0.2532 0.13 3b1j:B, 3b1k:A, 3b1k:H, 3b1k:B, 3b1k:G, 3b20:A, 3b20:B, 3b20:O, 3b20:P, 3b20:Q, 3b20:R, 2d2i:A, 2d2i:B, 2d2i:O, 2d2i:P, 2d2i:Q, 2d2i:R, 2duu:A, 2duu:B, 2duu:O, 2duu:P, 2duu:Q, 2duu:R
5 2nqa:B 318 68 0.0501 0.0755 0.3529 0.38 2nqa:A
6 7x2q:A 467 110 0.0626 0.0642 0.2727 0.59 7x2q:B
7 4kl8:S 279 74 0.0418 0.0717 0.2703 0.98 1cc1:S, 4kl8:T, 4kn9:S, 4kn9:T, 4ko1:S, 4ko1:T, 4ko2:S, 4ko2:T, 4ko3:S, 4ko3:T, 4ko4:S, 4ko4:T
8 6v8o:N 412 34 0.0313 0.0364 0.4412 1.3 6v92:N
9 2i9p:B 296 34 0.0334 0.0541 0.4706 1.7 2i9p:A, 2i9p:C, 2i9p:D
10 5az1:A 327 58 0.0313 0.0459 0.2586 3.1 5az0:A
11 5olp:A 432 63 0.0334 0.0370 0.2540 7.6 5olp:B
12 1if1:A 105 29 0.0271 0.1238 0.4483 7.8 1if1:B
13 6hwm:E 195 34 0.0313 0.0769 0.4412 9.8 6hwm:A, 6hwm:B, 6hwm:C, 6hwm:D, 6hwm:F, 6hwm:G, 6hwn:A, 6hwn:B, 6hwn:C, 6hwn:D, 6hwn:E, 6hwn:F, 6hwn:G

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218