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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MFAGLDLGSTNSKLVIIKEDGSYTFKVVPTRYEPVKAGELLLKNTGEIRNLVVTGYGRVAFNRGKVVTEITCQARGCHEL
FPEVDYILDLGGQDAKIIKKDGQGRVVNFLMNDKCAAGTGRFLEIILTAIGDDYRDEDLINEENAVPINSMCTVFAESEV
ISLLARGTSKRAVIAGLFKTTAKRLAKFAESLGKPRKLIFTGGGAKYPALRLFLQKEMGVEVVVPPEPSVTAALGAALIA
RET

The query sequence (length=243) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7yyl:E 243 243 1.0000 1.0000 1.0000 1.00e-178 7yyl:F, 7yyl:G, 7yyl:H, 7yzm:G, 7yzm:H, 7yzm:E, 7yzm:F, 7yzq:E, 7yzq:F, 7yzq:G, 7yzq:H
2 4eht:A 268 248 0.4403 0.3993 0.4315 3.12e-59 4eht:B, 4ehu:A, 4ehu:B, 4eia:A
3 1hux:A 259 244 0.3621 0.3398 0.3607 6.74e-42 1hux:B
4 1jcg:A 335 72 0.0905 0.0657 0.3056 0.039
5 3b8a:X 470 32 0.0453 0.0234 0.3438 0.68
6 6yxx:ED 598 46 0.0576 0.0234 0.3043 1.1 7aoi:XC, 6yxy:ED
7 1u7h:A 341 69 0.0988 0.0704 0.3478 1.6 1u7h:B, 1x7d:A, 1x7d:B
8 3o5b:A 479 31 0.0494 0.0251 0.3871 1.7 3o5b:B, 3o80:A, 3o8m:A
9 2v7y:A 504 42 0.0576 0.0278 0.3333 2.8
10 5hux:A 429 47 0.0741 0.0420 0.3830 4.5 5htp:A, 5hv7:A
11 5zeb:2 66 39 0.0576 0.2121 0.3590 5.1 8kab:g, 5o60:g, 7s0s:h, 8why:4, 7xam:g, 8xz3:g, 7y41:g, 5zep:y, 5zet:2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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